Research workbench
AlphaFold monomer V2.0 prediction for nisin immunity protein (P42708)
Analyse AlphaFold monomer V2.0 prediction for nisin immunity protein (P42708) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P42708
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x603786131b429eaC7e663e5851C902F5dCB72B70
- Molecule
- Nisin immunity protein
- UniProt
- P42708
- Pockets
- 2 · best druggability 0.56
Structure
1 distinct chain · 7% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nisin immunity protein | protein | 245 | 7% helix, 47% strand | P42708 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 204 | 0.56 | 0.79 | 20 | empty |
| 2 | 66 | 0.33 | 0.76 | 16 | empty |
Compared structures
- 2N2E · NMR solution structure of the C-terminal domain of NisI, a lipoprotein from Lactococcus… · an experimental structure of the same protein · chain A against A, TM-score 0.42
- 2N2E · NMR solution structure of the C-terminal domain of nisi, a lipoprotein from lactococcus… · an experimental structure of the same protein · chain A against A, TM-score 0.42
- 5XHB · Crystal structure of the full length of nisi in a lipid free form, the nisin immunity… · an experimental structure of the same protein · chain A against A, TM-score 0.42
- 5XHB · Crystal structure of the full length of NisI in a lipid free form, the nisin immunity… · an experimental structure of the same protein · chain A against A, TM-score 0.42
- 2N32 · NMR solution structure of the N-terminal domain of NisI, a lipoprotein from Lactococcus… · an experimental structure of the same protein · chain A against A, TM-score 0.41
- 2N32 · NMR solution structure of the N-terminal domain of nisi, a lipoprotein from lactococcus… · an experimental structure of the same protein · chain A against A, TM-score 0.41
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42708
- Elsewhere: UniProt P42708 · AlphaFold DB P42708
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