MolNFT v1 · #139487 · protein
Crystal structure of the full length of nisi in a lipid free form, the nisin immunity protein, from lactococcus lactis
5XHB: “Crystal structure of the full length of nisi in a lipid free form, the nisin immunity protein, from…”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.53). MolNFT v1 #139487 on GenesisL1: 3D structure, binding sites…
- PDB
- 5XHB
- Type
- protein
- Length
- 198 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nisin immunity protein
- UniProt
- P42708
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nisin immunity protein | protein | 198 | 6% helix, 58% strand | P42708 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.53 | 0.79 | 23 | SO4 |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 5XHB · Crystal structure of the full length of NisI in a lipid free form, the nisin immunity… · the same entry in another collection · chain A against A, TM-score 1.00
- P42708 · AlphaFold monomer V2.0 prediction for nisin immunity protein (P42708) · a predicted model of the same protein · chain A against A, TM-score 0.51
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42708
- Elsewhere: RCSB PDB 5XHB · PDBe 5XHB · UniProt P42708
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