Research workbench
AlphaFold monomer V2.0 prediction for 2,5-dihydroxypyridine 5,6-dioxygenase (Q88FY1)
Analyse AlphaFold monomer V2.0 prediction for 2,5-dihydroxypyridine 5,6-dioxygenase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q88FY1
- Type
- protein
- Length
- 350 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x79a905d858Ce72991FD6E7a9C6498620f42E146D
- Molecule
- 2,5-dihydroxypyridine 5,6-dioxygenase
- UniProt
- Q88FY1
- Pockets
- 3 · best druggability 0.66
Structure
1 distinct chain · 27% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2,5-dihydroxypyridine 5,6-dioxygenase | protein | 350 | 27% helix, 28% strand | Q88FY1 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 209 | 0.66 | 0.84 | 36 | empty |
| 2 | 181 | 0.61 | 0.82 | 31 | empty |
| 3 | 66 | 0.31 | 0.75 | 13 | empty |
Compared structures
- 7CN3 · 2,5-dihydroxypridine Dioxygenase in complex with 2,5-dihydroxypridine and product… · an experimental structure of the same protein · chain A against D, TM-score 0.99
- 7CN3 · 2,5-dihydroxypridine dioxygenase in complex with 2,5-dihydroxypridine and product… · an experimental structure of the same protein · chain A against C, TM-score 0.99
- 7CUP · Structure of 2,5-dihydroxypridine Dioxygenase from Pseudomonas putida KT2440 · an experimental structure of the same protein · chain A against C, TM-score 0.98
- 7CNT · Structure of 2,5-dihydroxypridine dioxygenase from pseudomonas putida KT2440 in complex… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 7CNT · Structure of 2,5-dihydroxypridine Dioxygenase from Pseudomonas putida KT2440 in complex… · an experimental structure of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88FY1
- Elsewhere: UniProt Q88FY1 · AlphaFold DB Q88FY1
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