Research workbench
AlphaFold monomer V2.0 prediction for peptide-N(4)-(N-acetyl-beta- GLUCOSAMINYL)ASPARAGINE amidase (Q9JI78)
Analyse AlphaFold monomer V2.0 prediction for peptide-N(4)-(N-acetyl-beta… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9JI78
- Type
- protein
- Length
- 651 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC35EFAFBd6C1C86993de1c3D20c02e3f198163fB
- Molecule
- Peptide-N(4)-(N-acetyl-beta-GLUCOSAMINYL)ASPARAGINE amidase
- UniProt
- Q9JI78
- Pockets
- 4 · best druggability 0.67
Structure
1 distinct chain · 34% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide-N(4)-(N-acetyl-beta-GLUCOSAMINYL)ASPARAGINE amidase | protein | 651 | 34% helix, 24% strand | Q9JI78 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 726 | 0.67 | 0.75 | 59 | empty |
| 2 | 449 | 0.60 | 0.75 | 37 | empty |
| 3 | 209 | 0.48 | 0.75 | 21 | empty |
| 4 | 153 | 0.44 | 0.75 | 19 | empty |
Compared structures
- 2F4M · The Mouse PNGase-HR23 Complex Reveals a Complete Remodulation of the Protein-Protein… · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 2F4M · The mouse pngase-HR23 complex reveals a complete remodulation of the protein-protein… · an experimental structure of the same protein · chain A against A, TM-score 0.44
- 2I74 · Crystal structure of mouse Peptide N-Glycanase C-terminal domain in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 2I74 · Crystal structure of mouse peptide N-glycanase C-terminal domain in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.28
- 2HPL · Crystal structure of the mouse p97/PNGase complex · an experimental structure of the same protein · chain A against A, TM-score 0.15
- 2HPL · Crystal structure of the mouse P97/PNGASE complex · an experimental structure of the same protein · chain A against A, TM-score 0.15
- 2HPJ · Crystal structure of the pub domain of mouse pngase · an experimental structure of the same protein · chain A against A, TM-score 0.15
- 2HPJ · Crystal structure of the PUB domain of mouse PNGase · an experimental structure of the same protein · chain A against A, TM-score 0.15
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JI78
- Elsewhere: UniProt Q9JI78 · AlphaFold DB Q9JI78
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