Research workbench
AlphaFold monomer V2.0 prediction for nuclear transcription factor Y subunit alpha (P23511)
Analyse AlphaFold monomer V2.0 prediction for nuclear transcription factor Y subunit… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P23511
- Type
- protein
- Length
- 347 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBF0D2e107Ce1EcD2C4369B042274201DB719AaAF
- Molecule
- Nuclear transcription factor Y subunit alpha
- UniProt
- P23511
- Pockets
- 2 · best druggability 0.31
Structure
1 distinct chain · 14% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nuclear transcription factor Y subunit alpha | protein | 347 | 14% helix, 5% strand | P23511 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.31 | 0.72 | 15 | empty |
| 2 | 66 | 0.29 | 0.74 | 15 | empty |
Compared structures
- 4AWL · The nf-Y transcription factor is structurally and functionally a sequence specific histone · an experimental structure of the same protein · chain A against A, TM-score 0.17
- 4AWL · The NF-Y transcription factor is structurally and functionally a sequence specific histone · an experimental structure of the same protein · chain A against A, TM-score 0.17
- 6QMP · Nf-YB/C heterodimer in complex with nf-ya peptide · an experimental structure of the same protein · chain A against A, TM-score 0.08
- 6QMP · NF-YB/C Heterodimer in Complex with NF-YA Peptide · an experimental structure of the same protein · chain A against A, TM-score 0.08
- 6QMQ · NF-YB/C Heterodimer in Complex with NF-YA-derived Peptide Stabilized with C8-Hydrocarbon… · an experimental structure of the same protein · chain A against A, TM-score 0.05
- 6QMQ · Nf-YB/C heterodimer in complex with nf-ya-derived peptide stabilized with C8-hydrocarbon… · an experimental structure of the same protein · chain A against A, TM-score 0.05
- 6QMS · Nf-YB/C heterodimer in complex with nf-ya-derived peptide stabilized with C11-hydrocarbon… · an experimental structure of the same protein · chain A against A, TM-score 0.05
- 6QMS · NF-YB/C Heterodimer in Complex with NF-YA-derived Peptide Stabilized with C11-Hydrocarbon… · an experimental structure of the same protein · chain A against A, TM-score 0.05
- 8QU2 · NF-YB/C Heterodimer in Complex with a 16-mer NF-YA-derived Peptide Stabilized with… · an experimental structure of the same protein · chain A against A, TM-score 0.04
- 8QU3 · NF-YB/C Heterodimer in Complex with a 13-mer NF-YA-derived Peptide Stabilized with… · an experimental structure of the same protein · chain A against A, TM-score 0.04
- 8QU4 · NF-YB/C Heterodimer in Complex with a 13-mer NF-YA-derived Peptide Stabilized with… · an experimental structure of the same protein · chain A against A, TM-score 0.03
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23511
- Elsewhere: UniProt P23511 · AlphaFold DB P23511
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