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AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (Q9FNN5)

Analyse AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone]… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession
Q9FNN5
Type
protein
Length
486 residues
Chains
1
Collection
MolNFT v1 / AlphaFold
Contract
0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner
0x97EfFf2d74994e28D3b69b1503Bd9c292B2Df480
Molecule
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
UniProt
Q9FNN5
Pockets
2 · best druggability 0.77

Structure

1 distinct chain · 43% helix, 12% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ANADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialprotein48643% helix, 12% strandQ9FNN5

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
18800.770.8063empty
2500.270.7413empty

Compared structures

  • 8BPX · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete composition) · an experimental structure of the same protein · chain A against F, TM-score 0.89
  • 8BED · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI peripheral tip) · an experimental structure of the same protein · chain A against F, TM-score 0.89
  • 8BQ6 · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation… · an experimental structure of the same protein · chain A against F, TM-score 0.89
  • 8BQ5 · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation… · an experimental structure of the same protein · chain A against F, TM-score 0.89
  • 7ARB · Cryo-EM structure of Arabidopsis thaliana Complex-I (complete composition) · an experimental structure of the same protein · chain A against F, TM-score 0.89
  • 7ARB · Cryo-EM structure of arabidopsis thaliana complex-I (complete composition) · an experimental structure of the same protein · chain A against F, TM-score 0.89
  • 7AQR · Cryo-EM structure of arabidopsis thaliana complex-I (peripheral arm) · an experimental structure of the same protein · chain A against F, TM-score 0.89
  • 7AQR · Cryo-EM structure of Arabidopsis thaliana Complex-I (peripheral arm) · an experimental structure of the same protein · chain A against F, TM-score 0.89
  • 7AR7 · Cryo-EM structure of arabidopsis thaliana complex-I (open conformation) · an experimental structure of the same protein · chain A against F, TM-score 0.88
  • 7AR7 · Cryo-EM structure of Arabidopsis thaliana complex-I (open conformation) · an experimental structure of the same protein · chain A against F, TM-score 0.88
  • 7AR8 · Cryo-EM structure of Arabidopsis thaliana complex-I (closed conformation) · an experimental structure of the same protein · chain A against F, TM-score 0.88
  • 7AR8 · Cryo-EM structure of arabidopsis thaliana complex-I (closed conformation) · an experimental structure of the same protein · chain A against F, TM-score 0.88

Analyse

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