Research workbench
AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (Q9D6J5)
Analyse AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone] 1 beta… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9D6J5
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xA8DDaf0A92150868e1cE25DA40f486Cd026B4089
- Molecule
- NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
- UniProt
- Q9D6J5
- Pockets
- 2 · best druggability 0.42
Structure
1 distinct chain · 35% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial | protein | 186 | 35% helix, 2% strand | Q9D6J5 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.42 | 0.81 | 15 | empty |
| 2 | 63 | 0.30 | 0.74 | 12 | empty |
Compared structures
- 8OM1 · Mitochondrial complex I from Mus musculus in the active state · an experimental structure of the same protein · chain A against l, TM-score 0.82
- 8RGT · Open Complex I from murine brain · an experimental structure of the same protein · chain A against l, TM-score 0.82
- 8IB6 · Respiratory complex Membrane domain of CI, focus-refined of type IA, Wild type mouse… · an experimental structure of the same protein · chain A against l, TM-score 0.82
- 8IB4 · Respiratory complex CI:CIII2, type IA, Wild type mouse under cold temperature · an experimental structure of the same protein · chain A against l, TM-score 0.82
- 8RGR · Closed Complex I from murine liver · an experimental structure of the same protein · chain A against l, TM-score 0.82
- 8PW6 · C respirasome from murine liver · an experimental structure of the same protein · chain A against l1, TM-score 0.82
- 8RGQ · Open Complex I from murine liver · an experimental structure of the same protein · chain A against l, TM-score 0.82
- 8PW7 · A respirasome from murine liver · an experimental structure of the same protein · chain A against l1, TM-score 0.82
- 8PW5 · CS respirasome from murine liver · an experimental structure of the same protein · chain A against l1, TM-score 0.82
- 7B93 · Cryo-EM structure of mitochondrial complex I from Mus musculus inhibited by IACS-2858 at… · an experimental structure of the same protein · chain A against l, TM-score 0.82
- 7B93 · Cryo-EM structure of mitochondrial complex I from mus musculus inhibited by iacs-2858 at… · an experimental structure of the same protein · chain A against l, TM-score 0.82
- 8RGP · Closed Complex I from murine brain · an experimental structure of the same protein · chain A against l, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9D6J5
- Elsewhere: UniProt Q9D6J5 · AlphaFold DB Q9D6J5
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