Research workbench
AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (P34942)
Analyse AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone] 1 alpha… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P34942
- Type
- protein
- Length
- 343 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbfA6E1D48226760148Fc4D9D0f78495B2Ffa0720
- Molecule
- NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
- UniProt
- P34942
- Pockets
- 4 · best druggability 0.64
Structure
1 distinct chain · 48% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial | protein | 343 | 48% helix, 7% strand | P34942 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 499 | 0.64 | 0.76 | 40 | empty |
| 2 | 204 | 0.59 | 0.80 | 27 | empty |
| 3 | 77 | 0.40 | 0.78 | 18 | empty |
| 4 | 52 | 0.35 | 0.79 | 10 | empty |
Compared structures
- 7R48 · Bovine complex I in the presence of IM1761092, deactive class iv (Composite map) · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 7R45 · Bovine complex I in the presence of IM1761092, deactive class i (Composite map) · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 8Q49 · Outward-facing, open2 proteoliposome complex I at 2.6 A. Initially purified in LMNG. · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 7QSN · Bovine complex I in lipid nanodisc, Deactive-apo · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 7QSN · Bovine complex I in lipid nanodisc, deactive-apo · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 7R46 · Bovine complex I in the presence of IM1761092, deactive class ii (Composite map) · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 7QSM · Bovine complex I in lipid nanodisc, Deactive-ligand (composite) · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 7QSM · Bovine complex I in lipid nanodisc, deactive-ligand (composite) · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 7R4D · Bovine complex I in the presence of IM1761092, deactive class vi (Composite map) · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 8Q4A · Outward-facing, open1 proteoliposome complex I at 2.6 A. Initially purified in LMNG. · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 7R47 · Bovine complex I in the presence of IM1761092, deactive class iii (Composite map) · an experimental structure of the same protein · chain A against O, TM-score 0.93
- 8Q0O · Outward-facing, open2 proteoliposome complex I at 3.1 A. Initially purified in DDM. · an experimental structure of the same protein · chain A against O, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P34942
- Elsewhere: UniProt P34942 · AlphaFold DB P34942
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