Research workbench
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (O67528)
Analyse AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (O67528) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O67528
- Type
- protein
- Length
- 142 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x97EfFf2d74994e28D3b69b1503Bd9c292B2Df480
- Molecule
- Nucleoside diphosphate kinase
- UniProt
- O67528
- Pockets
- 1 · best druggability 0.51
Structure
1 distinct chain · 46% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase | protein | 142 | 46% helix, 20% strand | O67528 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 142 | 0.51 | 0.80 | 27 | empty |
Compared structures
- 3ZTS · Hexagonal form P6122 of the aquifex aeolicus nucleoside diphosphate kinase (final stage… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3ZTS · Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FINAL STAGE… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3ZTQ · Hexagonal crystal form P61 of the aquifex aeolicus nucleoside diphosphate kinase · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3ZTQ · Hexagonal crystal form P61 of the Aquifex aeolicus nucleoside diphosphate kinase · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3ZTR · Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FIRST STAGE… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3ZTR · Hexagonal form P6122 of the aquifex aeolicus nucleoside diphosphate kinase (first stage… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3ZTP · Orthorhombic crystal form P21212 of the Aquifex aeolicus nucleoside diphosphate kinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 3ZTP · Orthorhombic crystal form P21212 of the aquifex aeolicus nucleoside diphosphate kinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 3ZTO · Orthorhombic crystal form C222 of the aquifex aeolicus nucleoside diphosphate kinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 3ZTO · Orthorhombic crystal form C222 of the Aquifex aeolicus nucleoside diphosphate kinase · an experimental structure of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O67528
- Elsewhere: UniProt O67528 · AlphaFold DB O67528
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