UniProt O67528
Nucleoside diphosphate kinase (O67528)
Nucleoside diphosphate kinase (UniProt O67528), EC 2.7.4.6: 10 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 131 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- O67528
- Protein
- Nucleoside diphosphate kinase
- EC
- 2.7.4.6
- Experimental structures
- 10
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 131 · 9 records with a druggable one
Structures
11 records of O67528 in the MolNFT archive: 10 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3ZTO | Orthorhombic crystal form C222 of the Aquifex aeolicus nucleoside diphosphate kinase | x-ray diffraction | A | SO4 | 1 (best 0.48) |
| 3ZTO | Orthorhombic crystal form C222 of the aquifex aeolicus nucleoside diphosphate kinase | x-ray diffraction | A | SO4 | 1 (best 0.48) |
| 3ZTP | Orthorhombic crystal form P21212 of the Aquifex aeolicus nucleoside diphosphate kinase | x-ray diffraction | A, C | SO4 | 4 (best 0.52) |
| 3ZTP | Orthorhombic crystal form P21212 of the aquifex aeolicus nucleoside diphosphate kinase | x-ray diffraction | A, C | SO4 | 4 (best 0.52) |
| 3ZTQ | Hexagonal crystal form P61 of the Aquifex aeolicus nucleoside diphosphate kinase | x-ray diffraction | A, B, C, D, E, F, G, H | — | 20 (best 0.85) |
| 3ZTQ | Hexagonal crystal form P61 of the aquifex aeolicus nucleoside diphosphate kinase | x-ray diffraction | A, B, C, D, E, F, G, H | — | 20 (best 0.85) |
| 3ZTR | Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FIRST STAGE OF… | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.85) |
| 3ZTR | Hexagonal form P6122 of the aquifex aeolicus nucleoside diphosphate kinase (first stage of… | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.85) |
| 3ZTS | Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FINAL STAGE OF… | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.85) |
| 3ZTS | Hexagonal form P6122 of the aquifex aeolicus nucleoside diphosphate kinase (final stage of… | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.85) |
| O67528 | AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (O67528) | predicted | A | — | 1 (best 0.51) |
Ligands
- SO4 · Sulfate ion · in 4 records
Experiment against prediction
- 3ZTS chain A against the predicted model O67528: TM-score 0.99, RMSD 0.38 Å
- 3ZTS chain A against the predicted model O67528: TM-score 0.99, RMSD 0.38 Å
- 3ZTQ chain A against the predicted model O67528: TM-score 0.99, RMSD 0.38 Å
- 3ZTQ chain A against the predicted model O67528: TM-score 0.99, RMSD 0.38 Å
- 3ZTR chain A against the predicted model O67528: TM-score 0.99, RMSD 0.39 Å
- 3ZTR chain A against the predicted model O67528: TM-score 0.99, RMSD 0.39 Å
- 3ZTP chain A against the predicted model O67528: TM-score 0.99, RMSD 0.41 Å
- 3ZTP chain A against the predicted model O67528: TM-score 0.99, RMSD 0.41 Å
- 3ZTO chain A against the predicted model O67528: TM-score 0.99, RMSD 0.44 Å
- 3ZTO chain A against the predicted model O67528: TM-score 0.99, RMSD 0.44 Å
Elsewhere
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