Research workbench
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase 3 (Q13232)
Analyse AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase 3 (Q13232) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q13232
- Type
- protein
- Length
- 169 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x02Ec5621A2d2D4f60b03875D3630DEF810B088E5
- Molecule
- Nucleoside diphosphate kinase 3
- UniProt
- Q13232
- Pockets
- 2 · best druggability 0.51
Structure
1 distinct chain · 51% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase 3 | protein | 169 | 51% helix, 14% strand | Q13232 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 239 | 0.51 | 0.75 | 32 | empty |
| 2 | 168 | 0.48 | 0.77 | 25 | empty |
Compared structures
- 8QW3 · Human NDPK-C in complex with ADP · an experimental structure of the same protein · chain A against E, TM-score 0.89
- 8QW1 · Human NDPK-C in complex with ADP and Mg2+ · an experimental structure of the same protein · chain A against D, TM-score 0.89
- 8QW0 · Human NDPK-C in complex with GDP · an experimental structure of the same protein · chain A against K, TM-score 0.89
- 1ZS6 · structure of human nucleoside-diphosphate kinase 3 · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 1ZS6 · Structure of human nucleoside-diphosphate kinase 3 · an experimental structure of the same protein · chain A against A, TM-score 0.89
- 8QW2 · Human NDPK-C in complex with UDP and Mg2+ · an experimental structure of the same protein · chain A against D, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13232
- Elsewhere: UniProt Q13232 · AlphaFold DB Q13232
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.