UniProt Q13232
Nucleoside diphosphate kinase 3 (Q13232)
Nucleoside diphosphate kinase 3 (UniProt Q13232): 6 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound, 56 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q13232
- Protein
- Nucleoside diphosphate kinase 3
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 5
- Pockets
- 56 · 5 records with a druggable one
Structures
7 records of Q13232 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1ZS6 | structure of human nucleoside-diphosphate kinase 3 | x-ray diffraction | A, B, D | — | — |
| 1ZS6 | Structure of human nucleoside-diphosphate kinase 3 | x-ray diffraction | A, B, D | — | — |
| 8QW0 | Human NDPK-C in complex with GDP | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | GDP, SO4 | 20 (best 0.89) |
| 8QW1 | Human NDPK-C in complex with ADP and Mg2+ | x-ray diffraction | A, B, C, D, E, F | ADP, MG | 11 (best 0.89) |
| 8QW2 | Human NDPK-C in complex with UDP and Mg2+ | x-ray diffraction | A, B, C, D, E, F | UDP, MG | 11 (best 0.89) |
| 8QW3 | Human NDPK-C in complex with ADP | x-ray diffraction | A, B, C, D, E, F | ADP, SO4 | 12 (best 0.88) |
| Q13232 | AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase 3 (Q13232) | predicted | A | — | 2 (best 0.51) |
Ligands
Experiment against prediction
- 8QW0 chain L against the predicted model Q13232: TM-score 0.99, RMSD 0.34 Å
- 8QW0 chain G against the predicted model Q13232: TM-score 0.99, RMSD 0.35 Å
- 8QW0 chain F against the predicted model Q13232: TM-score 0.99, RMSD 0.35 Å
- 8QW0 chain A against the predicted model Q13232: TM-score 0.99, RMSD 0.37 Å
- 8QW1 chain D against the predicted model Q13232: TM-score 0.99, RMSD 0.39 Å
- 8QW0 chain K against the predicted model Q13232: TM-score 0.99, RMSD 0.39 Å
- 8QW0 chain C against the predicted model Q13232: TM-score 0.99, RMSD 0.39 Å
- 8QW0 chain H against the predicted model Q13232: TM-score 0.99, RMSD 0.39 Å
- 1ZS6 chain A against the predicted model Q13232: TM-score 0.99, RMSD 0.39 Å
- 1ZS6 chain A against the predicted model Q13232: TM-score 0.99, RMSD 0.39 Å
Elsewhere
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