Research workbench
AlphaFold monomer V2.0 prediction for myomesin-1 (P52179)
Analyse AlphaFold monomer V2.0 prediction for myomesin-1 (P52179) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P52179
- Type
- protein
- Length
- 1,685 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0EA189b2343A464f560b44103f6A3396Da1dA8a9
- Molecule
- Myomesin-1
- UniProt
- P52179
- Pockets
- 8 · best druggability 0.63
Structure
1 distinct chain · 11% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myomesin-1 | protein | 1685 | 11% helix, 36% strand | P52179 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 506 | 0.63 | 0.76 | 47 | empty |
| 2 | 523 | 0.59 | 0.74 | 54 | empty |
| 3 | 363 | 0.58 | 0.76 | 38 | empty |
| 4 | 251 | 0.54 | 0.76 | 39 | empty |
| 5 | 160 | 0.43 | 0.74 | 30 | empty |
Compared structures
- 2Y25 · Crystal structure of the myomesin domains My11-My13 · an experimental structure of the same protein · chain A against B, TM-score 0.16
- 2Y25 · Crystal structure of the myomesin domains MY11-MY13 · an experimental structure of the same protein · chain A against B, TM-score 0.16
- 2R15 · Crystal structure of the myomesin domains 12 and 13 · an experimental structure of the same protein · chain A against A, TM-score 0.12
- 2R15 · Crystal structure of the myomesin domains 12 and 13 · an experimental structure of the same protein · chain A against A, TM-score 0.12
- 2Y23 · Crystal structure of the myomesin domains MY9-MY11 · an experimental structure of the same protein · chain A against A, TM-score 0.09
- 2Y23 · Crystal structure of the myomesin domains MY9-MY11 · an experimental structure of the same protein · chain A against A, TM-score 0.09
- 3RBS · Crystal structure of the myomesin domains 10 and 11 · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 3RBS · Crystal structure of the myomesin domains 10 and 11 · an experimental structure of the same protein · chain A against A, TM-score 0.07
- 5FM5 · Crystal structure of the MYOMESIN:OBSCURIN-like-1 complex · an experimental structure of the same protein · chain A against M, TM-score 0.07
- 5FM5 · Crystal structure of the myomesin:obscurin-like-1 complex · an experimental structure of the same protein · chain A against M, TM-score 0.07
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52179
- Elsewhere: UniProt P52179 · AlphaFold DB P52179
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