Research workbench
AlphaFold monomer V2.0 prediction for motility protein B (P55892)
Analyse AlphaFold monomer V2.0 prediction for motility protein B (P55892) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P55892
- Type
- protein
- Length
- 309 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5e58272ea25a05e06901A2eAe9f63939b344e0c6
- Molecule
- Motility protein B
- UniProt
- P55892
- Pockets
- 2 · best druggability 0.36
Structure
1 distinct chain · 42% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Motility protein B | protein | 309 | 42% helix, 12% strand | P55892 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.36 | 0.75 | 16 | empty |
| 2 | 56 | 0.31 | 0.77 | 17 | empty |
Compared structures
- 2ZVY · Structure of the periplasmic domain of motb from salmonella (crystal form II) · an experimental structure of the same protein · chain A against A, TM-score 0.57
- 2ZVY · Structure of the periplasmic domain of MotB from Salmonella (crystal form II) · an experimental structure of the same protein · chain A against A, TM-score 0.57
- 2ZVZ · Structure of the periplasmic domain of motb from salmonella (crystal form III) · an experimental structure of the same protein · chain A against A, TM-score 0.53
- 2ZVZ · Structure of the periplasmic domain of MotB from Salmonella (crystal form III) · an experimental structure of the same protein · chain A against A, TM-score 0.53
- 2ZOV · Structure of the periplasmic domain of MotB from Salmonella (crystal form I) · an experimental structure of the same protein · chain A against A, TM-score 0.52
- 2ZOV · Structure of the periplasmic domain of motb from salmonella (crystal form I) · an experimental structure of the same protein · chain A against A, TM-score 0.52
- 5Y40 · Structure of the periplasmic domain of the motb L119P mutant from salmonella (crystal… · an experimental structure of the same protein · chain A against D, TM-score 0.47
- 5Y40 · Structure of the periplasmic domain of the MotB L119P mutant from Salmonella (crystal… · an experimental structure of the same protein · chain A against D, TM-score 0.47
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55892
- Elsewhere: UniProt P55892 · AlphaFold DB P55892
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