Research workbench
AlphaFold monomer V2.0 prediction for serine hydroxymethyltransferase (Q5SI56)
Analyse AlphaFold monomer V2.0 prediction for serine hydroxymethyltransferase (Q5SI56) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5SI56
- Type
- protein
- Length
- 407 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9073C46348542FfE4327c3F363F9B51B22058e75
- Molecule
- Serine hydroxymethyltransferase
- UniProt
- Q5SI56
- Pockets
- 2 · best druggability 0.48
Structure
1 distinct chain · 47% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine hydroxymethyltransferase | protein | 407 | 47% helix, 14% strand | Q5SI56 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 183 | 0.48 | 0.76 | 22 | empty |
| 2 | 192 | 0.47 | 0.75 | 37 | empty |
Compared structures
- 8SSY · Room-temperature X-ray structure of Thermus thermophilus serine hydroxymethyltransferase… · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 8SUI · Joint X-ray/neutron structure of Thermus thermophilus serine hydroxymethyltransferase… · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 8SUJ · Joint X-ray/neutron structure of Thermus thermophilus serine hydroxymethyltransferase… · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 9BOW · X-ray structure of Thermus thermophilus serine hydroxymethyltransferase with PLP-L-Ser… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 9BOH · Room-temperature X-ray structure of Thermus Thermophilus serine hydroxymethyltransferase… · an experimental structure of the same protein · chain A against B, TM-score 0.98
- 9BPE · Joint X-ray/neutron structure of Thermus thermophilus serine hydroxymethyltransferase… · an experimental structure of the same protein · chain A against B, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SI56
- Elsewhere: UniProt Q5SI56 · AlphaFold DB Q5SI56
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