UniProt Q9B6D0
Cytochrome b (Q9B6D0)
Cytochrome b (UniProt Q9B6D0): 18 experimental structures and 1 predicted model on GenesisL1, 8 ligands bound, 241 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9B6D0
- Protein
- Cytochrome b
- Experimental structures
- 18
- Predicted models
- 1
- Ligands
- 8
- Pockets
- 241 · 18 records with a druggable one
Structures
19 records of Q9B6D0 in the MolNFT archive: 18 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 8AB6 | Complex III2 from Yarrowia lipolytica, combined datasets, consensus refinement | electron microscopy | C, N | HEM, PC1, PTY, CDL | 13 (best 0.83) |
| 8AB7 | Complex III2 from Yarrowia lipolytica, atovaquone and antimycin A bound | electron microscopy | C, N | HEM, PC1, PTY, CDL, AWB, AOQ | 15 (best 0.85) |
| 8AB8 | Complex III2, b-position, with decylubiqui and ascorbate-reduced | electron microscopy | C, N | HEM, PC1, PTY, CDL, DCQ | 13 (best 0.85) |
| 8AB9 | Complex III2 from Yarrowia lipolytica, ascorbate-reduced, b-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 13 (best 0.85) |
| 8ABA | Complex III2 from Yarrowia lipolytica, ascorbate-reduced, int-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 14 (best 0.86) |
| 8ABB | Complex III2 from Yarrowia lipolytica, ascorbate-reduced, c-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 14 (best 0.86) |
| 8ABE | Complex III2 from Yarrowia lipolytica, oxidised with ferricyanide, b-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 12 (best 0.83) |
| 8ABF | Complex III2 from Yarrowia lipolytica, oxidised with ferricyanide, int-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 13 (best 0.86) |
| 8ABG | Complex III2 from Yarrowia lipolytica, oxidised with ferricyanide, c-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 13 (best 0.85) |
| 8ABH | Complex III2 from Yarrowia lipolytica, antimycin A bound, b-position | electron microscopy | C, N | HEM, PC1, PTY, CDL, AWB | 14 (best 0.86) |
| 8ABI | Complex III2 from Yarrowia lipolytica,antimycin A bound, int-position | electron microscopy | C, N | HEM, PC1, PTY, CDL, AWB | 15 (best 0.86) |
| 8ABJ | Complex III2 from Yarrowia lipolytica, antimycin A bound, c-position | electron microscopy | C, N | HEM, PC1, PTY, CDL, AWB | 14 (best 0.86) |
| 8ABK | Complex III2 from Yarrowia lipolytica, decylubiquinol bound, b-position | electron microscopy | C, N | HEM, PC1, PTY, CDL, DCQ | 13 (best 0.84) |
| 8ABL | Complex III2 from Yarrowia lipolytica, with decylubiquinol and antimycin A, consensus refinement | electron microscopy | C, N | HEM, PC1, PTY, CDL, AWB | 13 (best 0.86) |
| 8ABM | Complex III2 from Yarrowia lipolytica, apo, b-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 12 (best 0.83) |
| 8AC3 | Complex III2 from Yarrowia lipolytica, apo, int-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 13 (best 0.84) |
| 8AC4 | Complex III2 from Yarrowia lipolytica, apo, c-position | electron microscopy | C, N | HEM, PC1, PTY, CDL | 14 (best 0.84) |
| 8AC5 | Complex III2 from Yarrowia lipolytica, with decylubiquinol, oxidised, b-position | electron microscopy | C, N | HEC, PC1, PTY, CDL | 13 (best 0.83) |
| Q9B6D0 | AlphaFold monomer V2.0 prediction for cytochrome B (Q9B6D0) | predicted | A | — | — |
Ligands
- CDL · Cardiolipin · in 18 records
- PC1 · 1,2-diacyl-sn-glycero-3-phosphocholine · in 18 records
- PTY · Phosphatidylethanolamine · in 18 records
- HEM · Protoporphyrin IX containing Fe · in 17 records
- AWB · [(2R,3S,6S,7R,8R)-3-[(3-formamido-2-oxidanyl-phenyl)carbonylamino]-8-hexyl-2,6-dimethyl-4,9-bis(oxidanylidene)-1,5-dioxonan-7-yl] 3-methylbutanoate · in 5 records
- DCQ · 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione · in 2 records
- AOQ · 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione · in 1 record
- HEC · Heme C · in 1 record
Experiment against prediction
- 8AB8 chain C against the predicted model Q9B6D0: TM-score 1.00, RMSD 0.47 Å
- 8AB9 chain C against the predicted model Q9B6D0: TM-score 1.00, RMSD 0.48 Å
- 8ABM chain C against the predicted model Q9B6D0: TM-score 1.00, RMSD 0.50 Å
- 8AC4 chain N against the predicted model Q9B6D0: TM-score 1.00, RMSD 0.50 Å
- 8AC3 chain N against the predicted model Q9B6D0: TM-score 0.99, RMSD 0.50 Å
- 8ABK chain C against the predicted model Q9B6D0: TM-score 0.99, RMSD 0.51 Å
- 8ABM chain N against the predicted model Q9B6D0: TM-score 0.99, RMSD 0.51 Å
- 8ABE chain C against the predicted model Q9B6D0: TM-score 0.99, RMSD 0.51 Å
- 8AC3 chain C against the predicted model Q9B6D0: TM-score 0.99, RMSD 0.51 Å
- 8AC4 chain C against the predicted model Q9B6D0: TM-score 0.99, RMSD 0.51 Å
Elsewhere
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