UniProt Q13131
5'-AMP-activated protein kinase catalytic subunit alpha-1 (Q13131)
5'-AMP-activated protein kinase catalytic subunit alpha-1 (UniProt Q13131), EC 2.7.11.1, 2.7.11.26: 20 experimental structures and 1 predicted model on GenesisL1, 7 ligands bound, 56 pockets. Binding sites, druggability and…
- UniProt
- Q13131
- Protein
- 5'-AMP-activated protein kinase catalytic subunit alpha-1
- EC
- 2.7.11.1, 2.7.11.26, 2.7.11.27, 2.7.11.31
- Experimental structures
- 20
- Predicted models
- 1
- Ligands
- 7
- Pockets
- 56 · 5 records with a druggable one
Structures
21 records of Q13131 in the MolNFT archive: 20 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4RED | Crystal structure of human AMPK alpha1 KD-AID with K43A mutation | x-ray diffraction | A, B | — | — |
| 4RED | Crystal structure of human ampk ALPHA1 kd-aid with K43A mutation | x-ray diffraction | A, B | — | — |
| 4RER | Crystal structure of the phosphorylated human alpha1 beta2 gamma1 holo-AMPK complex bound to AMP… | x-ray diffraction | A | — | — |
| 4RER | Crystal structure of the phosphorylated human ALPHA1 BETA2 GAMMA1 holo-ampk complex bound to AMP… | x-ray diffraction | A | — | — |
| 4REW | Crystal structure of the non-phosphorylated human alpha1 beta2 gamma1 holo-AMPK complex | x-ray diffraction | A | — | — |
| 4REW | Crystal structure of the non-phosphorylated human ALPHA1 BETA2 GAMMA1 holo-ampk complex | x-ray diffraction | A | — | — |
| 5EZV | X-ray crystal structure of AMP-activated protein kinase alpha-2/alpha-1 RIM chimaera… | x-ray diffraction | A, C | STU, C1V | — |
| 5EZV | X-ray crystal structure of AMP-activated protein kinase alpha-2/ALPHA- 1 rim chimaera… | x-ray diffraction | A, C | — | — |
| 6C9F | AMP-activated protein kinase bound to pharmacological activator R734 | x-ray diffraction | A | R34, STU | 8 (best 0.67) |
| 6C9F | AMP-activated protein kinase bound to pharmacological activator R734 | x-ray diffraction | A | R34, STU | — |
| 6C9G | AMP-activated protein kinase bound to pharmacological activator R739 | x-ray diffraction | A | R93, STU | — |
| 6C9H | non-phosphorylated AMP-activated protein kinase bound to pharmacological activator R734 | x-ray diffraction | A | R34, STU, AMP | 10 (best 0.85) |
| 6C9H | Non-phosphorylated AMP-activated protein kinase bound to pharmacological activator R734 | x-ray diffraction | A | R34, STU, AMP | — |
| 6C9J | AMP-activated protein kinase bound to pharmacological activator R734 | x-ray diffraction | A | R34, STU | — |
| 7JHG | Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Dorsomorphin (Compound C) and… | electron microscopy | A | TAK, ATP | 13 (best 0.85) |
| 7JHG | Cryo-EM structure of ATP-bound fully inactive ampk in complex with dorsomorphin (compound C) and… | electron microscopy | A | TAK | — |
| 7JHH | Cryo-EM structure of ATP-bound fully inactive AMPK in complex with Fab and nanobody | electron microscopy | A | — | 12 (best 0.86) |
| 7JHH | Cryo-EM structure of ATP-bound fully inactive ampk in complex with Fab and nanobody | electron microscopy | A | — | — |
| 7JIJ | ATP-bound AMP-activated protein kinase | x-ray diffraction | A | ATP | 13 (best 0.86) |
| 7JIJ | ATP-bound AMP-activated protein kinase | x-ray diffraction | A | ATP | — |
| Q13131 | AlphaFold monomer V2.0 prediction for 5'-AMP-activated protein kinase catalytic subunit alpha-1… | predicted | A | — | — |
Ligands
- STU · Staurosporine · in 7 records
- R34 · 5-{[6-chloro-5-(1-methyl-1H-indol-5-yl)-1H-benzimidazol-2-yl]oxy}-N-hydroxy-2-methylbenzamide · in 5 records
- ATP · Adenosine-5'-triphosphate · in 3 records
- AMP · Adenosine monophosphate · in 2 records
- TAK · 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine · in 2 records
- C1V · 3-[4-(2-hydroxyphenyl)phenyl]-4-oxidanyl-6-oxidanylidene-7H-thieno[2,3-b]pyridine-5-carbonitrile · in 1 record
- R93 · 5-{[6-chloro-5-(2'-hydroxy[1,1'-biphenyl]-4-yl)-1H-benzimidazol-2-yl]oxy}-N-hydroxy-2-methylbenzamide · in 1 record
Experiment against prediction
- 6C9F chain A against the predicted model Q13131: TM-score 0.99, RMSD 0.69 Å
- 6C9F chain A against the predicted model Q13131: TM-score 0.99, RMSD 0.69 Å
- 6C9J chain A against the predicted model Q13131: TM-score 0.99, RMSD 0.72 Å
- 6C9G chain A against the predicted model Q13131: TM-score 0.99, RMSD 0.93 Å
- 5EZV chain A against the predicted model Q13131: TM-score 0.96, RMSD 1.62 Å
- 5EZV chain A against the predicted model Q13131: TM-score 0.96, RMSD 1.62 Å
- 5EZV chain C against the predicted model Q13131: TM-score 0.96, RMSD 1.66 Å
- 5EZV chain C against the predicted model Q13131: TM-score 0.96, RMSD 1.66 Å
- 4REW chain A against the predicted model Q13131: TM-score 0.96, RMSD 1.56 Å
- 4REW chain A against the predicted model Q13131: TM-score 0.96, RMSD 1.56 Å
Elsewhere
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