UniProt Q02374
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial (Q02374)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial (UniProt Q02374): 48 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 56 pockets. Binding sites, druggability and experiment…
- UniProt
- Q02374
- Protein
- NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial
- Experimental structures
- 48
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 56 · 34 records with a druggable one
Structures
49 records of Q02374 in the MolNFT archive: 48 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7DGQ | Activity optimized supercomplex state1 | electron microscopy | Y | — | 1 (best 0.87) |
| 7DGR | Activity optimized supercomplex state2 | electron microscopy | Y | — | — |
| 7DGS | Activity optimized supercomplex state3 | electron microscopy | Y | — | 2 (best 0.84) |
| 7DGZ | Activity optimized complex I (closed form) | electron microscopy | Y | — | 2 (best 0.85) |
| 7DGZ | Activity optimized complex I (closed form) | electron microscopy | Y | — | — |
| 7DH0 | Activity optimized complex I (open form) | electron microscopy | Y | — | 2 (best 0.85) |
| 7DH0 | Activity optimized complex I (open form) | electron microscopy | Y | — | — |
| 7DKF | Activity optimized supercomplex state4 | electron microscopy | Y2 | — | — |
| 7QSD | Bovine complex I in the active state at 3.1 A | electron microscopy | j | — | 1 (best 0.83) |
| 7QSD | Bovine complex I in the active state at 3.1 a | electron microscopy | j | — | — |
| 7QSK | Bovine complex I in lipid nanodisc, Active-Q10 | electron microscopy | j | 3PE | — |
| 7QSK | Bovine complex I in lipid nanodisc, active-Q10 | electron microscopy | j | 3PE | — |
| 7QSL | Bovine complex I in lipid nanodisc, Active-apo | electron microscopy | j | — | 2 (best 0.87) |
| 7QSL | Bovine complex I in lipid nanodisc, active-apo | electron microscopy | j | — | — |
| 7QSM | Bovine complex I in lipid nanodisc, Deactive-ligand (composite) | electron microscopy | j | 3PE | 1 (best 0.83) |
| 7QSM | Bovine complex I in lipid nanodisc, deactive-ligand (composite) | electron microscopy | j | 3PE | — |
| 7QSN | Bovine complex I in lipid nanodisc, Deactive-apo | electron microscopy | j | 3PE | 2 (best 0.87) |
| 7QSN | Bovine complex I in lipid nanodisc, deactive-apo | electron microscopy | j | 3PE | — |
| 7QSO | Bovine complex I in lipid nanodisc, State 3 (Slack) | electron microscopy | j | — | — |
| 7QSO | Bovine complex I in lipid nanodisc, state 3 (slack) | electron microscopy | j | — | — |
| 7R41 | Bovine complex I in the presence of IM1761092, active class i (Composite map) | electron microscopy | j | — | 1 (best 0.84) |
| 7R42 | Bovine complex I in the presence of IM1761092, active class ii (Composite map) | electron microscopy | j | — | 2 (best 0.87) |
| 7R43 | Bovine complex I in the presence of IM1761092, active class iii (Composite map) | electron microscopy | j | — | — |
| 7R44 | Bovine complex I in the presence of IM1761092, active class iv (Composite map) | electron microscopy | j | — | 1 (best 0.86) |
| 7R45 | Bovine complex I in the presence of IM1761092, deactive class i (Composite map) | electron microscopy | j | — | 1 (best 0.84) |
| 7R46 | Bovine complex I in the presence of IM1761092, deactive class ii (Composite map) | electron microscopy | j | — | 1 (best 0.87) |
| 7R47 | Bovine complex I in the presence of IM1761092, deactive class iii (Composite map) | electron microscopy | j | — | — |
| 7R48 | Bovine complex I in the presence of IM1761092, deactive class iv (Composite map) | electron microscopy | j | — | 1 (best 0.83) |
| 7R4C | Bovine complex I in the presence of IM1761092, deactive class v (Composite map) | electron microscopy | j | — | 1 (best 0.83) |
| 7R4D | Bovine complex I in the presence of IM1761092, deactive class vi (Composite map) | electron microscopy | j | — | 1 (best 0.83) |
| 7R4F | Bovine complex I in the presence of IM1761092, slack class i (Composite map) | electron microscopy | j | — | 1 (best 0.88) |
| 7R4G | Bovine complex I in the presence of IM1761092, slack class ii (Composite map) | electron microscopy | j | — | 1 (best 0.83) |
| 8Q0A | Inward-facing, closed proteoliposome complex I at 3.1 A. Initially purified in DDM. | electron microscopy | j | 3PE | 2 (best 0.87) |
| 8Q0F | Inward-facing, open2 proteoliposome complex I at 3.1 A. Initially purified in DDM. | electron microscopy | j | — | 2 (best 0.87) |
| 8Q0J | Inward-facing, slack proteoliposome complex I at 3.8 A. Initially purified in DDM. | electron microscopy | j | MYR | 2 (best 0.86) |
| 8Q0M | Outward-facing, closed proteoliposome complex I at 3.1 A. Initially purified in DDM. | electron microscopy | j | — | 2 (best 0.86) |
| 8Q0O | Outward-facing, open2 proteoliposome complex I at 3.1 A. Initially purified in DDM. | electron microscopy | j | — | 2 (best 0.88) |
| 8Q0Q | Outward-facing, slack proteoliposome complex I at 3.6 A. Initially purified in DDM | electron microscopy | j | — | 2 (best 0.85) |
| 8Q1P | Inward-facing, open2 proteoliposome complex I at 2.9 A, after deactivation treatment. Initially… | electron microscopy | j | — | 2 (best 0.87) |
| 8Q1U | Inward-facing, open1 proteoliposome complex I at 3.3 A, after deactivation treatment. Initially… | electron microscopy | j | 3PE | 2 (best 0.86) |
| 8Q1Y | Outward-facing, open2 proteoliposome complex I at 2.6 A, after deactivation treatment. Initially… | electron microscopy | j | — | 2 (best 0.88) |
| 8Q25 | Outward-facing, open1 proteoliposome complex I at 2.8 A, after deactivation treatment. Initially… | electron microscopy | j | — | 2 (best 0.88) |
| 8Q45 | Inward-facing, closed proteoliposome complex I at 2.7 A. Initially purified in LMNG. | electron microscopy | j | 3PE | 2 (best 0.87) |
| 8Q46 | Inward-facing, open2 proteoliposome complex I at 2.6 A. Initially purified in LMNG. | electron microscopy | j | — | 2 (best 0.86) |
| 8Q47 | Inward-facing, open1 proteoliposome complex I at 2.9 A. Initially purified in LMNG. | electron microscopy | j | 3PE | 2 (best 0.88) |
| 8Q48 | Outward-facing, closed proteoliposome complex I at 2.5 A. Initially purified in LMNG. | electron microscopy | j | — | 2 (best 0.87) |
| 8Q49 | Outward-facing, open2 proteoliposome complex I at 2.6 A. Initially purified in LMNG. | electron microscopy | j | — | 2 (best 0.88) |
| 8Q4A | Outward-facing, open1 proteoliposome complex I at 2.6 A. Initially purified in LMNG. | electron microscopy | j | — | 2 (best 0.87) |
| Q02374 | AlphaFold monomer V2.0 prediction for NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2… | predicted | A | — | — |
Ligands
Experiment against prediction
- 7R41 chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.59 Å
- 7QSM chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.61 Å
- 7QSM chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.61 Å
- 7R4F chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.59 Å
- 7QSD chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.51 Å
- 7QSD chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.51 Å
- 7R44 chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.61 Å
- 7QSL chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.64 Å
- 7QSL chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.64 Å
- 7R4C chain j against the predicted model Q02374: TM-score 0.82, RMSD 1.64 Å
Elsewhere
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