UniProt P39116
Pectate lyase (P39116)
Pectate lyase (UniProt P39116): 22 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P39116
- Protein
- Pectate lyase
- Experimental structures
- 22
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 1 · 0 records with a druggable one
Structures
23 records of P39116 in the MolNFT archive: 22 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1BN8 | Bacillus subtilis pectate lyase | x-ray diffraction | A | — | — |
| 1BN8 | Bacillus subtilis pectate lyase | x-ray diffraction | A | — | — |
| 2BSP | Bacillus subtilis pectate lyase R279K mutant | x-ray diffraction | A | — | — |
| 2BSP | Bacillus subtilis pectate lyase R279K mutant | x-ray diffraction | A | — | — |
| 2NZM | Hexasaccharide I bound to Bacillus subtilis pectate lyase | x-ray diffraction | A | — | — |
| 2NZM | Hexasaccharide I bound to bacillus subtilis pectate lyase | x-ray diffraction | A | — | — |
| 2O04 | Pectate lyase bound to hexasaccharide compound II | x-ray diffraction | A | — | — |
| 2O04 | Pectate lyase bound to hexasaccharide compound II | x-ray diffraction | A | — | — |
| 2O0V | Pectate lyase bound to hexasaccharide compound III | x-ray diffraction | A | — | — |
| 2O0V | Pectate lyase bound to hexasaccharide compound III | x-ray diffraction | A | — | — |
| 2O0W | Pectate lyase bound to hexasaccharide compound IV | x-ray diffraction | A | — | — |
| 2O0W | Pectate lyase bound to hexasaccharide compound IV | x-ray diffraction | A | — | — |
| 2O17 | Pectate lyase bound to hexasaccharide | x-ray diffraction | A | — | — |
| 2O17 | Pectate lyase bound to hexasaccharide | x-ray diffraction | A | — | — |
| 2O1D | Pectate lyase bound to trisaccharide | x-ray diffraction | A | — | — |
| 2O1D | Pectate lyase bound to trisaccharide | x-ray diffraction | A | — | — |
| 3KRG | Structural insights into substrate specificity and the anti beta-elimination mechanism of pectate… | x-ray diffraction | A | — | — |
| 3KRG | Structural insights into substrate specificity and the anti beta- elimination mechanism of pectate… | x-ray diffraction | A | — | — |
| 5AMV | Structural insights into the loss of catalytic competence in pectate lyase at low pH | x-ray diffraction | A | — | — |
| 5AMV | Structural insights into the loss of catalytic competence in pectate lyase at low pH | x-ray diffraction | A | — | — |
| 5X2I | Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide | x-ray diffraction | A | CA, CL | — |
| 5X2I | Polygalacturonate lyase by fusing with a self-assembling amphipathic peptide | x-ray diffraction | A | CA, CL | — |
| P39116 | AlphaFold monomer V2.0 prediction for pectate lyase (P39116) | predicted | A | — | 1 (best 0.49) |
Ligands
Experiment against prediction
- 2O0V chain A against the predicted model P39116: TM-score 1.00, RMSD 0.30 Å
- 2O0V chain A against the predicted model P39116: TM-score 1.00, RMSD 0.30 Å
- 2NZM chain A against the predicted model P39116: TM-score 1.00, RMSD 0.31 Å
- 2NZM chain A against the predicted model P39116: TM-score 1.00, RMSD 0.31 Å
- 2O1D chain A against the predicted model P39116: TM-score 1.00, RMSD 0.32 Å
- 2O1D chain A against the predicted model P39116: TM-score 1.00, RMSD 0.32 Å
- 3KRG chain A against the predicted model P39116: TM-score 1.00, RMSD 0.33 Å
- 3KRG chain A against the predicted model P39116: TM-score 1.00, RMSD 0.33 Å
- 2O17 chain A against the predicted model P39116: TM-score 1.00, RMSD 0.34 Å
- 2O17 chain A against the predicted model P39116: TM-score 1.00, RMSD 0.34 Å
Elsewhere
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