UniProt P35120
Nopaline-binding periplasmic protein (P35120)
Nopaline-binding periplasmic protein (UniProt P35120): 19 experimental structures and 1 predicted model on GenesisL1, 7 ligands bound, 16 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P35120
- Protein
- Nopaline-binding periplasmic protein
- Experimental structures
- 19
- Predicted models
- 1
- Ligands
- 7
- Pockets
- 16 · 4 records with a druggable one
Structures
20 records of P35120 in the MolNFT archive: 19 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4P0I | Structure of the PBP NocT | x-ray diffraction | A, B | — | — |
| 4P0I | Structure of the pbp noct | x-ray diffraction | A, B | — | — |
| 4POW | Structure of the PBP NocT in complex with pyronopaline | x-ray diffraction | A, B | — | — |
| 4POW | Structure of the pbp noct in complex with pyronopaline | x-ray diffraction | A, B | — | — |
| 4POX | Structure of the pbp noct in complex with nopaline | x-ray diffraction | A, B | — | — |
| 4PP0 | Structure of the PBP NocT-M117N in complex with pyronopaline | x-ray diffraction | A, B | — | — |
| 4PP0 | Structure of the pbp noct-M117N in complex with pyronopaline | x-ray diffraction | A, B | — | — |
| 5ITO | Structure of the periplasmic binding protein M117N-NocT from A. tumefaciens in complex with octopine | x-ray diffraction | A, B | TOE | — |
| 5ITO | Structure of the periplasmic binding protein M117N-noct from a. tumefaciens in complex with octopine | x-ray diffraction | A, B | — | — |
| 5ITP | Structure of the periplasmic binding protein NocT from A.tumefaciens in complex with octopine | x-ray diffraction | A, B | — | — |
| 5ITP | Structure of the periplasmic binding protein noct from A.TUMEFACIENS in complex with octopine | x-ray diffraction | A, B | — | — |
| 5OT8 | Structure of the periplasmic binding protein (PBP) NocT-G97S mutant from A. tumefaciens C58 in… | x-ray diffraction | A, B | 6DB, SO4, CL | 5 (best 0.72) |
| 5OT8 | Structure of the periplasmic binding protein (pbp) noct-G97S mutant from a. tumefaciens C58 in… | x-ray diffraction | A, B | SO4, CL | — |
| 5OT9 | Structure of the periplasmic binding protein (pbp) noct from A.TUMEFACIENS C58 in complex with… | x-ray diffraction | A, B | — | — |
| 5OTA | Structure of the periplasmic binding protein (PBP) NocT from Agrobacterium tumefaciens C58 in… | x-ray diffraction | A, B | AQQ | 4 (best 0.71) |
| 5OTA | Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens C58 in… | x-ray diffraction | A, B | — | — |
| 5OTC | Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens C58 in… | x-ray diffraction | A, B | CL | — |
| 5OVZ | High resolution structure of the PBP NocT in complex with nopaline | x-ray diffraction | A, B | 2W2, NA | 5 (best 0.71) |
| 5OVZ | High resolution structure of the pbp noct in complex with nopaline | x-ray diffraction | A, B | NA | — |
| P35120 | AlphaFold monomer V2.0 prediction for nopaline-binding periplasmic protein (P35120) | predicted | A | — | 2 (best 0.69) |
Ligands
- CL · Chloride ion · in 3 records
- NA · Sodium ion · in 2 records
- SO4 · Sulfate ion · in 2 records
- 2W2 · N-[(1S)-4-carbamimidamido-1-carboxybutyl]-D-glutamic acid · in 1 record
- 6DB · octopine · in 1 record
- AQQ · (2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid · in 1 record
- TOE · 2-[2-(2-methoxy-ethoxy)-ethoxy]-ethoxyl · in 1 record
Experiment against prediction
- 5OT8 chain A against the predicted model P35120: TM-score 1.00, RMSD 0.27 Å
- 5OTA chain A against the predicted model P35120: TM-score 1.00, RMSD 0.31 Å
- 5OVZ chain B against the predicted model P35120: TM-score 1.00, RMSD 0.33 Å
- 5OT8 chain B against the predicted model P35120: TM-score 1.00, RMSD 0.36 Å
- 4POW chain A against the predicted model P35120: TM-score 0.99, RMSD 0.21 Å
- 4POW chain A against the predicted model P35120: TM-score 0.99, RMSD 0.21 Å
- 5ITP chain A against the predicted model P35120: TM-score 0.99, RMSD 0.22 Å
- 5ITP chain A against the predicted model P35120: TM-score 0.99, RMSD 0.22 Å
- 4PP0 chain A against the predicted model P35120: TM-score 0.99, RMSD 0.23 Å
- 4PP0 chain A against the predicted model P35120: TM-score 0.99, RMSD 0.23 Å
Elsewhere
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