GL1X · GenesisL1 explorer

Ligand · 6DB

6DB · octopine

6DB, octopine (C9 H18 N4 O4, 246.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
6DB
Formula
C9 H18 N4 O4
Class
ligand
Structures
2
PDB entries
2

Binding sites

6DB in 2 structures; the first of them:

  • 5OT8 · Structure of the periplasmic binding protein (PBP) NocT-G97S mutant from A. tumefaciens… · 6DB A301 · binds GLU36, TYR39, TYR42, ASN43, TRP77, ALA94, ALA95, MET96 and 12 more
  • 5VVI · Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator… · 6DB A301 · binds MSE98, PRO99, ALA100, PRO128, SER129, ASP147, GLN193, GLU194 and 7 more

Residues it binds most

SER 5, ALA 5, ASP 3, GLU 5, PRO 3, GLN 5, LEU 3, PHE 5, MET 2, TYR 2 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • SO4 · Sulfate ion
  • ACY · Acetic acid
  • PEG · Di(hydroxyethyl)ether

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.