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Ligand · OP1

OP1 · 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline

OP1, 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline (C11 H18 N4 O5, 286.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
OP1
Formula
C11 H18 N4 O5
Class
ligand
Structures
4
PDB entries
2

Binding sites

OP1 in 4 structures; the first of them:

  • 4POW · Structure of the PBP NocT in complex with pyronopaline · OP1 A303 · binds GLU36, TYR39, TYR42, ASN43, TRP77, ALA94, ALA95, MET96 and 14 more
  • 4PP0 · Structure of the PBP NocT-M117N in complex with pyronopaline · OP1 A301 · binds GLU36, TYR39, TYR42, ASN43, TRP77, ALA94, ALA95, MET96 and 13 more
  • 4POW · Structure of the pbp noct in complex with pyronopaline · OP1 A303 · binds GLU36, TYR39, TYR42, ASN43, TRP77, ALA94, ALA95, MET96 and 14 more
  • 4PP0 · Structure of the pbp noct-M117N in complex with pyronopaline · OP1 A301 · binds GLU36, TYR39, TYR42, ASN43, TRP77, ALA94, ALA95, MET96 and 13 more

Residues it binds most

ALA 8, SER 8, THR 8, TYR 8, ASN 8, MET 8, PHE 8, ARG 8, GLN 8, GLU 8 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether

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