UniProt P13835
Avirulence protein B (P13835)
Avirulence protein B (UniProt P13835): 10 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 9 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P13835
- Protein
- Avirulence protein B
- Experimental structures
- 10
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 9 · 4 records with a druggable one
Structures
11 records of P13835 in the MolNFT archive: 10 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1NH1 | Crystal Structure of the Type III Effector AvrB from Pseudomonas syringae. | x-ray diffraction | A | — | — |
| 1NH1 | Crystal structure of the type III effector avrb from pseudomonas syringae. | x-ray diffraction | A | — | — |
| 2NUD | The structure of the type III effector AvrB complexed with a high-affinity RIN4 peptide | x-ray diffraction | A, B | — | — |
| 2NUD | The structure of the type III effector avrb complexed with a high-affinity RIN4 peptide | x-ray diffraction | A, B | — | — |
| 2NUN | The structure of the type III effector AvrB complexed with ADP | x-ray diffraction | A | — | — |
| 2NUN | The structure of the type III effector avrb complexed with ADP | x-ray diffraction | A | — | — |
| 8TWJ | AvrB_R266A bound with UDP | x-ray diffraction | A | UDP | 3 (best 0.63) |
| 8TWO | AvrB bound with UDP and RIN4_T166-Rha | x-ray diffraction | A | UDP, RAM | 2 (best 0.68) |
| 8TWS | AvrB bound with UDP-rhamnose and RIN4 C-NOI motif | x-ray diffraction | A | AWU | 2 (best 0.71) |
| 8TXF | AvrB bound with RIN4 C-NOI motif | x-ray diffraction | A | — | 2 (best 0.71) |
| P13835 | AlphaFold monomer V2.0 prediction for avirulence protein B (P13835) | predicted | A | — | — |
Ligands
- UDP · Uridine-5'-diphosphate · in 2 records
- AWU · [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene) pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate · in 1 record
- RAM · alpha-L-rhamnopyranose · in 1 record
Experiment against prediction
- 2NUD chain A against the predicted model P13835: TM-score 0.98, RMSD 0.99 Å
- 2NUD chain A against the predicted model P13835: TM-score 0.98, RMSD 0.99 Å
- 2NUD chain B against the predicted model P13835: TM-score 0.98, RMSD 1.00 Å
- 2NUD chain B against the predicted model P13835: TM-score 0.98, RMSD 1.00 Å
- 8TXF chain A against the predicted model P13835: TM-score 0.97, RMSD 1.20 Å
- 1NH1 chain A against the predicted model P13835: TM-score 0.97, RMSD 1.18 Å
- 1NH1 chain A against the predicted model P13835: TM-score 0.97, RMSD 1.18 Å
- 8TWO chain A against the predicted model P13835: TM-score 0.97, RMSD 1.28 Å
- 8TWS chain A against the predicted model P13835: TM-score 0.97, RMSD 1.29 Å
- 8TWJ chain A against the predicted model P13835: TM-score 0.96, RMSD 1.39 Å
Elsewhere
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