UniProt P12239
Cytochrome b559 subunit beta (P12239)
Cytochrome b559 subunit beta (UniProt P12239): 74 experimental structures and 1 predicted model on GenesisL1, 14 ligands bound, 89 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P12239
- Protein
- Cytochrome b559 subunit beta
- Experimental structures
- 74
- Predicted models
- 1
- Ligands
- 14
- Pockets
- 89 · 35 records with a druggable one
Structures
75 records of P12239 in the MolNFT archive: 74 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1W5C | Photosystem II from Thermosynechococcus elongatus | x-ray diffraction | F, L | — | — |
| 1W5C | Photosystem II from thermosynechococcus elongatus | x-ray diffraction | F, L | — | — |
| 3A0B | Crystal structure of Br-substituted Photosystem II complex | x-ray diffraction | F, f | — | — |
| 3A0B | Crystal structure of br-substituted photosystem II complex | x-ray diffraction | F, f | — | — |
| 3A0H | Crystal structure of I-substituted Photosystem II complex | x-ray diffraction | F, f | — | — |
| 3A0H | Crystal structure of I-substituted photosystem II complex | x-ray diffraction | F, f | — | — |
| 3WU2 | Crystal structure analysis of Photosystem II complex | x-ray diffraction | F, f | — | — |
| 3WU2 | Crystal structure analysis of photosystem II complex | x-ray diffraction | F, f | — | — |
| 4IL6 | Structure of Sr-substituted photosystem II | x-ray diffraction | F, f | — | — |
| 4IL6 | Structure of sr-substituted photosystem II | x-ray diffraction | F, f | — | — |
| 4UB6 | Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser | x-ray diffraction | F, f | — | — |
| 4UB6 | Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser | x-ray diffraction | F, f | — | — |
| 4UB8 | Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser | x-ray diffraction | F, f | — | — |
| 4UB8 | Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser | x-ray diffraction | F, f | — | — |
| 5B5E | Crystal structure analysis of photosystem II complex | x-ray diffraction | F, f | — | — |
| 5B66 | Crystal structure analysis of photosystem II complex | x-ray diffraction | F, f | — | — |
| 5GTH | Native XFEL structure of photosystem II (dark dataset) | x-ray diffraction | F, f | CLA, PL9, BCR, SQD, LHG, HEM | 3 (best 0.82) |
| 5GTH | Native xfel structure of photosystem II (dark dataset) | x-ray diffraction | F, f | — | — |
| 5GTI | Native XFEL structure of photosystem II (two flash dataset) | x-ray diffraction | F, f | CLA, PL9, BCR, SQD, LHG, HEM | 3 (best 0.82) |
| 5GTI | Native xfel structure of photosystem II (two flash dataset) | x-ray diffraction | F, f | — | — |
| 5V2C | Re-refinement of crystal structure of photosystem II complex | x-ray diffraction | F, f | PL9, BCR, DGD, LHG, HEM, MG | 3 (best 0.83) |
| 5V2C | Re-refinement of crystal structure of photosystem II complex | x-ray diffraction | F, f | PL9, BCR, DGD, LHG, HEM, MG | — |
| 5WS5 | Native XFEL structure of photosystem II (preflash dark dataset) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | 2 (best 0.79) |
| 5WS5 | Native xfel structure of photosystem II (preflash dark dataset) | x-ray diffraction | F, f | PL9, BCR, LMG, LHG, HEM, SQD | — |
| 5WS6 | Native XFEL structure of Photosystem II (preflash two-flash dataset | x-ray diffraction | F, f | PL9, BCR, LHG, HEM, SQD, LMG | 4 (best 0.78) |
| 5WS6 | Native xfel structure of photosystem II (preflash two-flash dataset | x-ray diffraction | F, f | PL9, BCR, LHG, HEM, SQD, LMG | — |
| 6JLJ | XFEL structure of cyanobacterial photosystem II (dark state, dataset1) | x-ray diffraction | F, f | CLA, PL9, BCR, LHG, HEM, SQD | 3 (best 0.84) |
| 6JLJ | Xfel structure of cyanobacterial photosystem II (dark state, DATASET1) | x-ray diffraction | F, f | CLA, PL9, BCR, LHG, HEM, SQD | — |
| 6JLK | XFEL structure of cyanobacterial photosystem II (1F state, dataset1) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | 3 (best 0.84) |
| 6JLK | Xfel structure of cyanobacterial photosystem II (1F state, DATASET1) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | — |
| 6JLL | XFEL structure of cyanobacterial photosystem II (2F state, dataset1) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | 3 (best 0.81) |
| 6JLL | Xfel structure of cyanobacterial photosystem II (2F state, DATASET1) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | — |
| 6JLM | XFEL structure of cyanobacterial photosystem II (dark state, dataset2) | x-ray diffraction | F, f | CLA, PL9, BCR, LHG, HEM, SQD | 3 (best 0.83) |
| 6JLM | Xfel structure of cyanobacterial photosystem II (dark state, DATASET2) | x-ray diffraction | F, f | PL9, BCR, LHG, HEM, SQD, CA | — |
| 6JLN | XFEL structure of cyanobacterial photosystem II (1F state, dataset2) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | 2 (best 0.83) |
| 6JLN | Xfel structure of cyanobacterial photosystem II (1F state, DATASET2) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | — |
| 6JLO | XFEL structure of cyanobacterial photosystem II (2F state, dataset2) | x-ray diffraction | F, f | CLA, PL9, LHG, BCR, LMG, HEM | 2 (best 0.83) |
| 6JLO | Xfel structure of cyanobacterial photosystem II (2F state, DATASET2) | x-ray diffraction | F, f | CLA, PL9, LHG, BCR, LMG, HEM | — |
| 6JLP | XFEL structure of cyanobacterial photosystem II (3F state, dataset2) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | 3 (best 0.83) |
| 6JLP | Xfel structure of cyanobacterial photosystem II (3F state, DATASET2) | x-ray diffraction | F, f | CLA, PL9, BCR, LMG, LHG, HEM | — |
| 7CJI | Photosystem II structure in the S1 state | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, HEM | 2 (best 0.84) |
| 7CJI | Photosystem II structure in the S1 state | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, HEM | — |
| 7CJJ | Photosystem II structure in the S2 state | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, HEM | 2 (best 0.80) |
| 7CJJ | Photosystem II structure in the S2 state | x-ray diffraction | F, f | PL9, BCR, LMG, SQD, LHG, HEM | — |
| 7COU | Structure of cyanobacterial photosystem II in the dark S1 state | x-ray diffraction | F, f | PL9, BCR, SQD, LMG, LHG, HEC | 2 (best 0.79) |
| 7COU | Structure of cyanobacterial photosystem II in the dark S1 state | x-ray diffraction | F, f | PL9, BCR, SQD, LMG, LHG, HEC | — |
| 7CZL | Structural insights into a dimeric Psb27-photosystem II complex from a cyanobacterium… | electron microscopy | F, f | PQ9, BCR, MGE, HEM | — |
| 7CZL | Structural insights into a dimeric PSB27-photosystem II complex from a cyanobacterium… | electron microscopy | F, f | PQ9, BCR, MGE, HEM | — |
| 7D1T | Cryo-EM Structure of PSII at 1.95 angstrom resolution | electron microscopy | F, f | PL9, BCR, LMG, HEM, SQD, UNL | — |
| 7D1T | Cryo-EM structure of psii at 1.95 ångström resolution | electron microscopy | F, f | PL9, BCR, LMG, HEM, SQD, UNL | — |
| 7D1U | Cryo-EM Structure of PSII at 2.08 angstrom resolution | electron microscopy | F, f | CLA, PL9, BCR, SQD, LMG, LHG | 2 (best 0.77) |
| 7D1U | Cryo-EM structure of psii at 2.08 ångström resolution | electron microscopy | F, f | PL9, BCR, SQD, LMG, LHG, UNL | — |
| 7DXA | PSII intermediate Psb28-RC47 | electron microscopy | f | BCR, MGE, HEM | 1 (best 0.55) |
| 7DXA | Psii intermediate PSB28-RC47 | electron microscopy | f | BCR, MGE, HEM | — |
| 7DXH | Cryo-EM structure of PSII intermediate Psb28-PSII complex | electron microscopy | f | BCR, HEM, MGE | 1 (best 0.57) |
| 7DXH | Cryo-EM structure of psii intermediate PSB28-psii complex | electron microscopy | f | BCR, HEM, MGE | — |
| 7EDA | Structure of monomeric photosystem II | electron microscopy | F | PL9, BCR, SQD, LMG, HEM | 3 (best 0.79) |
| 7EDA | Structure of monomeric photosystem II | electron microscopy | F | PL9, BCR, SQD, LMG, HEM | — |
| 8GN0 | Crystal structure of DCBQ-bound photosystem II complex | x-ray diffraction | F, f | CLA, PL9, BCR, DGD, SQD, LMG | 2 (best 0.77) |
| 8GN1 | Crystal structure of DBBQ-bound photosystem II complex | x-ray diffraction | F, f | CLA, PL9, BCR, DGD, LMG, LHG | 2 (best 0.80) |
15 records more on the page itself.
Ligands
- BCR · Beta-carotene · in 56 records
- HEM · Protoporphyrin IX containing Fe · in 54 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 50 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 50 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 50 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 46 records
- CA · Calcium ion · in 40 records
- MG · Magnesium ion · in 33 records
- CLA · Chlorophyll A · in 21 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 11 records
- UNL · Unknown ligand · in 7 records
- MGE · (1S)-2-(alpha-L-allopyranosyloxy)-1-[(tridecanoyloxy) methyl]ethyl palmitate · in 6 records
- HEC · Heme C · in 2 records
- PQ9 · 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18,22,26-heptaenyl]-2,3-dimethylbenzo-1,4-quinone · in 2 records
Experiment against prediction
- 5WS5 chain f against the predicted model P12239: TM-score 0.91, RMSD 0.65 Å
- 5WS5 chain f against the predicted model P12239: TM-score 0.91, RMSD 0.65 Å
- 5WS6 chain f against the predicted model P12239: TM-score 0.90, RMSD 0.71 Å
- 5WS6 chain f against the predicted model P12239: TM-score 0.90, RMSD 0.71 Å
- 5GTH chain f against the predicted model P12239: TM-score 0.89, RMSD 0.76 Å
- 5GTH chain f against the predicted model P12239: TM-score 0.89, RMSD 0.76 Å
- 5GTI chain f against the predicted model P12239: TM-score 0.89, RMSD 0.76 Å
- 5GTI chain f against the predicted model P12239: TM-score 0.89, RMSD 0.76 Å
- 8IRB chain f against the predicted model P12239: TM-score 0.89, RMSD 0.80 Å
- 7COU chain f against the predicted model P12239: TM-score 0.89, RMSD 0.67 Å
Elsewhere
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