UniProt P06585
Photosystem II protein D1 (P06585)
Photosystem II protein D1 (UniProt P06585), EC 1.10.3.9: 6 experimental structures and 1 predicted model on GenesisL1, 12 ligands bound, 45 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P06585
- Protein
- Photosystem II protein D1
- EC
- 1.10.3.9
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 12
- Pockets
- 45 · 4 records with a druggable one
Structures
7 records of P06585 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5XNL | Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum | electron microscopy | A, a | OEX, FE2, CL, CLA, PHO, BCR | 14 (best 0.84) |
| 5XNL | Structure of stacked C2S2M2-type psii-lhcii supercomplex from pisum sativum | electron microscopy | A, a | OEX, FE2, CL, CLA, PHO, BCR | — |
| 5XNM | Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum | electron microscopy | A, a | OEX, FE2, CLA, PHO, BCR, SQD | 15 (best 0.84) |
| 5XNM | Structure of unstacked C2S2M2-type psii-lhcii supercomplex from pisum sativum | electron microscopy | A, a | OEX, FE2, CLA, PHO, BCR, SQD | — |
| 6YP7 | PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions | electron microscopy | a, A | OEX, FE2, CL, CLA, PHO, BCR | 12 (best 0.85) |
| 6YP7 | Psii-lhcii C2S2 supercomplex from pisum sativum grown in high light conditions | electron microscopy | a, A | OEX, FE2, CL, CLA, PHO, BCR | — |
| P06585 | AlphaFold monomer V2.0 prediction for photosystem II protein D1 (P06585) | predicted | A | — | 4 (best 0.65) |
Ligands
- BCR · Beta-carotene · in 6 records
- BCT · Bicarbonate ion · in 6 records
- CLA · Chlorophyll A · in 6 records
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 6 records
- FE2 · Fe (II) ion · in 6 records
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 6 records
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 6 records
- OEX · Ca-MN4-O5 cluster · in 6 records
- PHO · Pheophytin A · in 6 records
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 6 records
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 6 records
- CL · Chloride ion · in 4 records
Experiment against prediction
- 5XNM chain A against the predicted model P06585: TM-score 0.99, RMSD 0.69 Å
- 5XNM chain A against the predicted model P06585: TM-score 0.99, RMSD 0.69 Å
- 5XNL chain A against the predicted model P06585: TM-score 0.99, RMSD 0.69 Å
- 5XNL chain A against the predicted model P06585: TM-score 0.99, RMSD 0.69 Å
- 6YP7 chain a against the predicted model P06585: TM-score 0.97, RMSD 1.15 Å
- 6YP7 chain a against the predicted model P06585: TM-score 0.97, RMSD 1.15 Å
- 6YP7 chain A against the predicted model P06585: TM-score 0.97, RMSD 1.15 Å
Elsewhere
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