UniProt P05058
Kanamycin nucleotidyltransferase (P05058)
Kanamycin nucleotidyltransferase (UniProt P05058), EC 2.7.7.-: 8 experimental structures and 1 predicted model on GenesisL1, 7 ligands bound, 15 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P05058
- Protein
- Kanamycin nucleotidyltransferase
- EC
- 2.7.7.-
- Experimental structures
- 8
- Predicted models
- 1
- Ligands
- 7
- Pockets
- 15 · 4 records with a druggable one
Structures
9 records of P05058 in the MolNFT archive: 8 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6P01 | Apo structure of the E52D mutant of ANT-4 | x-ray diffraction | A, B | CL, MG | 4 (best 0.79) |
| 6P01 | Apo structure of the E52D mutant of ant-4 | x-ray diffraction | A, B | CL, MG | — |
| 6P04 | Binary structure of the E52D mutant of ANT-4'' with Neomycin | x-ray diffraction | A, B | NMY, MG | 4 (best 0.79) |
| 6P04 | Binary structure of the E52D mutant of ant-4'' with neomycin | x-ray diffraction | A, B | NMY, MG | — |
| 6P06 | Ternary structure of the E52D mutant of ANT-4 with Neomycin and AMPCPP | x-ray diffraction | A, B | NMY, APC, CA | 3 (best 0.80) |
| 6P06 | Ternary structure of the E52D mutant of ant-4 with neomycin and ampcpp | x-ray diffraction | A, B | NMY, APC, CA | — |
| 6P08 | Ternary structure of the E52D mutant of ANT-4'' with Neomycin, AMP and Pyrophosphate | x-ray diffraction | A, D | NMY, PPV, MG, AMP | 4 (best 0.78) |
| 6P08 | Ternary structure of the E52D mutant of ant-4'' with neomycin, AMP and pyrophosphate | x-ray diffraction | A, D | NMY, PPV, MG, AMP | — |
| P05058 | AlphaFold monomer V2.0 prediction for kanamycin nucleotidyltransferase (P05058) | predicted | A | — | — |
Ligands
Experiment against prediction
- 6P04 chain A against the predicted model P05058: TM-score 1.00, RMSD 0.26 Å
- 6P04 chain A against the predicted model P05058: TM-score 1.00, RMSD 0.26 Å
- 6P04 chain B against the predicted model P05058: TM-score 1.00, RMSD 0.34 Å
- 6P01 chain B against the predicted model P05058: TM-score 1.00, RMSD 0.35 Å
- 6P06 chain A against the predicted model P05058: TM-score 1.00, RMSD 0.36 Å
- 6P06 chain A against the predicted model P05058: TM-score 1.00, RMSD 0.36 Å
- 6P06 chain B against the predicted model P05058: TM-score 1.00, RMSD 0.38 Å
- 6P06 chain B against the predicted model P05058: TM-score 1.00, RMSD 0.38 Å
- 6P08 chain A against the predicted model P05058: TM-score 0.99, RMSD 0.43 Å
- 6P08 chain A against the predicted model P05058: TM-score 0.99, RMSD 0.43 Å
Elsewhere
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