MolNFT v1 · #159754 · protein

Binary structure of the E52D mutant of ant-4'' with neomycin

6P04: “Binary structure of the E52D mutant of ant-4'' with neomycin”. X-ray diffraction, 2 ligands (NMY, MG). MolNFT v1 #159754 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6P04
Type: protein
Length: 504 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P05058
Ligands: NMY, MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	252	—	P05058

Ligands and binding sites

NMY · Neomycin · ligand · 2 copies · chains A, B
MG · Magnesium ion · metal · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6P04 · Binary structure of the E52D mutant of ANT-4'' with Neomycin · the same entry in another collection · chain A against A, TM-score 1.00
P05058 · AlphaFold monomer V2.0 prediction for kanamycin nucleotidyltransferase (P05058) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P05058
Elsewhere: RCSB PDB 6P04 · PDBe 6P04 · UniProt P05058

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