UniProt P02948
Light-harvesting protein B-870 alpha chain (P02948)
Light-harvesting protein B-870 alpha chain (UniProt P02948): 2 experimental structures and 1 predicted model on GenesisL1, 7 ligands bound, 30 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P02948
- Protein
- Light-harvesting protein B-870 alpha chain
- Experimental structures
- 2
- Predicted models
- 1
- Ligands
- 7
- Pockets
- 30 · 2 records with a druggable one
Structures
3 records of P02948 in the MolNFT archive: 2 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7YML | Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus | electron microscopy | A, D, F, I, K, O, Q, S, V, Y | U10, PGV, BPH, SPO, BCL, MYR | 15 (best 0.86) |
| 8B64 | Cryo-EM structure of RC-LH1-PufX photosynthetic core complex from Rba. capsulatus | electron microscopy | a, e, b, d, t, s, u, r, o, n, k, j, i, g, f | BCL, SPO, 3PE | 15 (best 0.84) |
| P02948 | AlphaFold monomer V2.0 prediction for light-harvesting protein B-870 alpha chain (P02948) | predicted | A | — | — |
Ligands
- BCL · Bacteriochlorophyll A · in 2 records
- SPO · Spheroidene · in 2 records
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · in 1 record
- BPH · Bacteriopheophytin A · in 1 record
- MYR · Myristic acid · in 1 record
- PGV · (1R)-2-{[{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11E)-octadec-11-enoate · in 1 record
- U10 · Ubiquinone-10 · in 1 record
Experiment against prediction
- 7YML chain Y against the predicted model P02948: TM-score 0.72, RMSD 1.59 Å
- 8B64 chain u against the predicted model P02948: TM-score 0.71, RMSD 1.43 Å
- 8B64 chain t against the predicted model P02948: TM-score 0.70, RMSD 1.76 Å
- 8B64 chain o against the predicted model P02948: TM-score 0.63, RMSD 1.75 Å
- 8B64 chain e against the predicted model P02948: TM-score 0.61, RMSD 1.98 Å
- 7YML chain K against the predicted model P02948: TM-score 0.60, RMSD 2.23 Å
- 7YML chain F against the predicted model P02948: TM-score 0.59, RMSD 1.84 Å
- 8B64 chain k against the predicted model P02948: TM-score 0.58, RMSD 1.92 Å
- 7YML chain D against the predicted model P02948: TM-score 0.58, RMSD 2.37 Å
- 8B64 chain a against the predicted model P02948: TM-score 0.56, RMSD 2.57 Å
Elsewhere
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