UniProt B9KDD4
Undecaprenyl-diphosphooligosaccharide--protein glycotransferase (B9KDD4)
Undecaprenyl-diphosphooligosaccharide--protein glycotransferase (UniProt B9KDD4), EC 2.4.99.19: 6 experimental structures and 1 predicted model on GenesisL1, 4 ligands bound, 21 pockets. Binding sites, druggability and experiment…
- UniProt
- B9KDD4
- Protein
- Undecaprenyl-diphosphooligosaccharide--protein glycotransferase
- EC
- 2.4.99.19
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 4
- Pockets
- 21 · 2 records with a druggable one
Structures
7 records of B9KDD4 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3RCE | Bacterial oligosaccharyltransferase PglB | x-ray diffraction | A | — | — |
| 3RCE | Bacterial oligosaccharyltransferase pglb | x-ray diffraction | A | — | — |
| 5OGL | Structure of bacterial oligosaccharyltransferase PglB in complex with an acceptor peptide and an… | x-ray diffraction | A | MN, 9UB, NA | 11 (best 0.72) |
| 5OGL | Structure of bacterial oligosaccharyltransferase pglb in complex with an acceptor peptide and an… | x-ray diffraction | A | MN, 9UB, NA | — |
| 6GXC | Bacterial oligosaccharyltransferase PglB in complex with an inhibitory peptide and a reactive… | x-ray diffraction | A | MN, NA, FFK | — |
| 6GXC | Bacterial oligosaccharyltransferase pglb in complex with an inhibitory peptide and a reactive… | x-ray diffraction | A | MN, NA, FFK | — |
| B9KDD4 | AlphaFold monomer V2.0 prediction for undecaprenyl- diphosphooligosaccharide--protein… | predicted | A | — | 10 (best 0.77) |
Ligands
- MN · Manganese (II) ion · in 4 records
- NA · Sodium ion · in 4 records
- 9UB · [(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acid · in 2 records
- FFK · [(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] [oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2, 6,10,14-tetraenoxy]phosphoryl] hydrogen phosphate · in 2 records
Experiment against prediction
- 5OGL chain A against the predicted model B9KDD4: TM-score 1.00, RMSD 0.40 Å
- 5OGL chain A against the predicted model B9KDD4: TM-score 1.00, RMSD 0.40 Å
- 6GXC chain A against the predicted model B9KDD4: TM-score 1.00, RMSD 0.51 Å
- 6GXC chain A against the predicted model B9KDD4: TM-score 1.00, RMSD 0.51 Å
- 3RCE chain A against the predicted model B9KDD4: TM-score 0.99, RMSD 0.81 Å
- 3RCE chain A against the predicted model B9KDD4: TM-score 0.99, RMSD 0.81 Å
Elsewhere
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