MolNFT v1 · #296955 · protein
AlphaFold monomer V2.0 prediction for undecaprenyl- diphosphooligosaccharide--protein glycotransferase (B9KDD4)
B9KDD4 · Undecaprenyl-diphosphooligosaccharide--protein…: “AlphaFold monomer V2.0 prediction for undecaprenyl- diphosphooligosaccharide--protein glycotransferase…”. 10 pockets (best druggability 0.77). MolNFT v1 #296955 on GenesisL1: 3D…
- Accession
- B9KDD4
- Type
- protein
- Length
- 712 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf99Dfb88a9dDC28BfCf98bd01481300A29a317a9
- Molecule
- Undecaprenyl-diphosphooligosaccharide--protein glycotransferase
- UniProt
- B9KDD4
- Pockets
- 10 · best druggability 0.77
Structure
1 distinct chain · 58% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Undecaprenyl-diphosphooligosaccharide--protein glycotransferase | protein | 712 | 58% helix, 11% strand | B9KDD4 |
Pockets
10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 960 | 0.77 | 0.79 | 73 | empty |
| 2 | 98 | 0.59 | 0.87 | 20 | empty |
| 3 | 124 | 0.46 | 0.77 | 19 | empty |
| 4 | 100 | 0.45 | 0.79 | 19 | empty |
| 5 | 117 | 0.42 | 0.76 | 25 | empty |
Compared structures
- 5OGL · Structure of bacterial oligosaccharyltransferase pglb in complex with an acceptor peptide… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6GXC · Bacterial oligosaccharyltransferase pglb in complex with an inhibitory peptide and a… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 6GXC · Bacterial oligosaccharyltransferase PglB in complex with an inhibitory peptide and a… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3RCE · Bacterial oligosaccharyltransferase PglB · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 3RCE · Bacterial oligosaccharyltransferase pglb · an experimental structure of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9KDD4
- Elsewhere: UniProt B9KDD4 · AlphaFold DB B9KDD4
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