UniProt A6MVT2
Photosystem II protein D1 (A6MVT2)
Photosystem II protein D1 (UniProt A6MVT2), EC 1.10.3.9: 1 experimental structure and 1 predicted model on GenesisL1, 12 ligands bound, 18 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- A6MVT2
- Protein
- Photosystem II protein D1
- EC
- 1.10.3.9
- Experimental structures
- 1
- Predicted models
- 1
- Ligands
- 12
- Pockets
- 18 · 2 records with a druggable one
Structures
2 records of A6MVT2 in the MolNFT archive: 1 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 8XLP | Structure of inactive Photosystem II associated with CAC antenna from Rhodomonas Salina | electron microscopy | a, A | FE2, CLA, PHO, WVN, SQD, PL9 | 15 (best 0.84) |
| A6MVT2 | AlphaFold monomer V2.0 prediction for photosystem II protein D1 (A6MVT2) | predicted | A | — | 3 (best 0.71) |
Ligands
- BCT · Bicarbonate ion · in 1 record
- CL · Chloride ion · in 1 record
- CLA · Chlorophyll A · in 1 record
- DGD · Digalactosyl diacyl glycerol (dgdg) · in 1 record
- FE2 · Fe (II) ion · in 1 record
- LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · in 1 record
- LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 1 record
- MN · Manganese (II) ion · in 1 record
- PHO · Pheophytin A · in 1 record
- PL9 · 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2, 6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone · in 1 record
- SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 1 record
- WVN · 1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene · in 1 record
Experiment against prediction
- 8XLP chain A against the predicted model A6MVT2: TM-score 0.99, RMSD 0.69 Å
- 8XLP chain a against the predicted model A6MVT2: TM-score 0.99, RMSD 0.70 Å
Elsewhere
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