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Ligand · ZEX

ZEX · (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol

ZEX, (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (C40 H56 O2, 568.9 g/mol), in the…

Component
ZEX
Formula
C40 H56 O2
Class
ligand
Structures
13
PDB entries
9

Binding sites

ZEX in 13 structures; the first of them:

  • 5L8R · The structure of plant photosystem I super-complex at 2.6 angstrom resolution. · ZEX F301 · binds VAL200, SER203, ALA204, VAL229, LEU230, TRP157, TYR218, LEU222
  • 5OY0 · Structure of synechocystis photosystem I trimer at 2.5A resolution · ZEX F4016 · binds LEU707, PHE457, VAL55, ASP56, GLY57, PHE65, ALA76, GLY77 and 6 more
  • 5ZGB · Cryo-EM structure of the red algal PSI-LHCR · ZEX 1613 · binds MET51, CYS54, LEU55, ASN125, PRO126, LEU127, LEU145, ALA146 and 5 more
  • 5ZGH · Cryo-EM structure of the red algal PSI-LHCR · ZEX 1613 · binds MET51, LEU52, CYS54, LEU55, PHE124, ASN125, PRO126, LEU127 and 10 more

Residues it binds most

PHE 151, LEU 147, ALA 86, TYR 98, VAL 92, ILE 122, PRO 88, HIS 60, GLY 64, MET 67 (residue and the binding sites it lines).

Found with

  • LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole
  • BCR · Beta-carotene
  • CLA · Chlorophyll A
  • DGD · Digalactosyl diacyl glycerol (dgdg)
  • PQN · Phylloquinone
  • SF4 · Iron/sulfur cluster
  • CL0 · Chlorophyll A isomer
  • LMG · 1,2-distearoyl-monogalactosyl-diglyceride
  • LMT · Dodecyl-beta-D-maltoside
  • CA · Calcium ion
  • 1DO · 1-dodecanol
  • 3XQ · (2S)-2,3-dihydroxypropyl octadecanoate

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