Ligand · Z61
Z61 · 2-deoxy-alpha-D-arabino-hexopyranose
Z61, 2-deoxy-alpha-D-arabino-hexopyranose (C6 H12 O5, 164.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…
- Component
- Z61
- Formula
- C6 H12 O5
- Class
- ligand
- Structures
- 5
- PDB entries
- 3
Binding sites
Z61 in 5 structures; the first of them:
- 5HJO · Murine endoplasmic reticulum alpha-glucosidase II with bound substrate analogue · Z61 G2 · binds TRP423, ASP451, ILE452, ILE488, TRP525, TRP562, ASP564, MET565 and 5 more
- 6X95 · 2-deoxy-glucose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding… · Z61 A201 · binds ASP110, ASP111, ASN128, GLN129, SER130, ASP155, GLN156, GLY157 and 2 more
- 7PRT · Crystal structure of human heparanase in complex with covalent inhibitor CB678 · Z61 D2 · binds GLY349, GLY350, GLN383, ALA388, GLY389, TYR391, ASP27
- 6X95 · 2-deoxy-glucose-bound structure of marinomonas primoryensis PA14 carbohydrate-binding… · Z61 A201 · binds ASP110, ASP111, GLN129, GLN156, GLY157, GLY158, ASP159
- 7PRT · Crystal structure of human heparanase in complex with covalent inhibitor CB678 · Z61 D2 · binds GLY349, GLY350, GLY389, TYR391, ASP27
Residues it binds most
ASP 6, GLY 4, TRP 2, GLN 3, ILE 2, ARG 2, HIS 2, MET 2, PHE 2, TYR 2 (residue and the binding sites it lines).
Found with
- EDO · 1,2-ethanediol
- CA · Calcium ion
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
- 8I4 · (2R,3S,5R,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexane-1-carboxylic acid
- FUC · alpha-L-fucopyranose
- CL · Chloride ion
- DGO · D-glucal
- BMA · beta-D-mannopyranose
- MAN · alpha-D-mannopyranose
- ACT · Acetate ion
- FMT · Formic acid
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