GL1X · GenesisL1 explorer

Ligand · YYJ

YYJ · 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose

YYJ, 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose (C6 H12 O18 S4, 500.4 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (8 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
YYJ
Formula
C6 H12 O18 S4
Class
ligand
Structures
12
PDB entries
8

Binding sites

YYJ in 12 structures; the first of them:

  • 7LRF · Netrin-1 in complex with SOS · YYJ K2 · binds ARG353
  • 7NE0 · Structure of the ternary complex between Netrin-1, Repulsive-Guidance Molecule-B (RGMB)… · YYJ I2 · binds LYS101
  • 7NE1 · Structure of the complex between Netrin-1 and its receptor Neogenin · YYJ G2 · binds ARG76, ARG89, SER90, CYS91, HIS92, LEU93
  • 7PGN · HHP-C in complex with glycosaminoglycan mimic SOS · YYJ E2 · binds LYS277, GLY278, GLY279, ASP280, LYS351, PRO490, ARG514
  • 8CKL · Semaphorin-5A TSR 3-4 domains in complex with sucrose octasulfate (SOS) · YYJ H2 · binds GLU703, LYS705, LYS734
  • 8HUE · Crystal structure of FGF2-M2 mutant - D28E/C78I/C96I/S137P · YYJ D2 · binds ASN36, ARG129, LYS134, GLN143, LYS144, ALA145
  • 8RMJ · Drosophila Semaphorin 2b in complex with glycosaminoglycan mimic SOS · YYJ F2 · binds ALA534, VAL555, ALA557, CYS558, ARG559, PRO560
  • 7LRF · Netrin-1 in complex with sos · YYJ K2 · binds ARG353
  • 7NE0 · Structure of the ternary complex between netrin-1, repulsive-guidance molecule-B (rgmb)… · YYJ I2 · binds LYS101
  • 7NE1 · Structure of the complex between netrin-1 and its receptor neogenin · YYJ G2 · binds ARG76, ARG89, SER90, CYS91, HIS92, LEU93
  • 7PGK · Hhip-N, the N-terminal domain of the hedgehog-interacting protein (hhip), in complex with… · YYJ C2 · binds LYS46, ARG47, LYS49, ARG81
  • 7PGN · Hhp-C in complex with glycosaminoglycan mimic sos · YYJ E2 · binds LYS277, GLY278, GLY279, ASP280, LYS351, PRO490, ARG514

Residues it binds most

ARG 22, LYS 17, PRO 7, GLY 4, HIS 6, ALA 3, ASP 4, CYS 3, LEU 3, SER 3 (residue and the binding sites it lines).

Found with

  • GU4 · 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose
  • CA · Calcium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • BMA · beta-D-mannopyranose
  • NA · Sodium ion
  • MAN · alpha-D-mannopyranose
  • CL · Chloride ion
  • NO3 · Nitrate ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol
  • NHE · 2-[N-cyclohexylamino]ethane sulfonic acid

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.