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Ligand · YNP

YNP · Cryptophycin 1

YNP, Cryptophycin 1 (C35 H43 Cl N2 O8, 655.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
YNP
Formula
C35 H43 Cl N2 O8
Class
ligand
Structures
3
PDB entries
2

Binding sites

YNP in 3 structures; the first of them:

  • 7M18 · HeLa-tubulin in complex with cryptophycin 1 · YNP B501 · binds GLY98, ASN99, ASN100, LYS103, ASP177, THR178, VAL179, VAL180 and 12 more
  • 7M18 · Hela-tubulin in complex with cryptophycin 1 · YNP B501 · binds GLY98, ASN99, ASN100, THR178, VAL179, VAL180, PHE394, TRP397 and 6 more
  • 7M20 · 18-mer hela-tubulin rings in complex with cryptophycin 1 · YNP A501 · binds GLY98, ASN99, ASN100, LYS103, THR178, VAL179, PHE394, TRP397 and 12 more

Residues it binds most

ASN 25, THR 25, VAL 25, PRO 25, LYS 17, CYS 25, GLU 25, GLY 25, MET 25, PHE 25 (residue and the binding sites it lines).

Found with

  • GDP · Guanosine-5'-diphosphate
  • GTP · Guanosine-5'-triphosphate

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