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Ligand · YLL

YLL · (1R,2S,3S,4S,5R,6R)-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol

YLL, (1R,2S,3S,4S,5R,6R)-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol (C7 H14 O6, 194.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
YLL
Formula
C7 H14 O6
Class
ligand
Structures
2
PDB entries
2

Binding sites

YLL in 2 structures; the first of them:

  • 8BQA · CjCel5B endo-glucanase bound to CB665 covalent inhibitor · YLL AAA403 · binds TRP28, HIS97, ASN131, GLU132, TYR194, GLU220, ALA226, ASN227 and 2 more
  • 8OZ1 · CjCel5D endo-xyloglucanase bounc to CB665 covalent inhibitor · YLL A803 · binds ASN60, HIS136, ASN182, GLU183, TYR253, LEU260, GLU318, TRP360

Residues it binds most

ASN 2, GLU 2, TRP 2, HIS 2, TYR 2, ALA 1, GLY 1, LEU 1 (residue and the binding sites it lines).

Found with

  • RBH · ~{N}-[(2~{S},3~{S},4~{S},5~{R})-2-(hydroxymethyl)-4,5,6-tris(oxidanyl)oxan-3-yl]-2-oxidanyl-ethanamide
  • XYS · alpha-D-xylopyranose
  • BO3 · Boric acid

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