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Ligand · YEG

YEG · cyclopentanol

YEG, cyclopentanol (C5 H10 O, 86.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
YEG
Formula
C5 H10 O
Class
ligand
Structures
4
PDB entries
2

Binding sites

YEG in 4 structures; the first of them:

  • 3RS0 · H-Ras soaked in neat cyclopentanol: one of 10 in MSCS set · YEG A206 · binds ASP30, GLU31, TYR32
  • 4J60 · Crystal structure of Ribonuclease A soaked in 25% Cyclopentanol: One of twelve in MSCS set · YEG A203 · binds ASN62, VAL63, ALA64, THR70
  • 3RS0 · H-RAS soaked in neat cyclopentanol: one of 10 in mscs set · YEG A206 · binds ASP30, GLU31, TYR32
  • 4J60 · Crystal structure of ribonuclease a soaked in 25% cyclopentanol: one of twelve in mscs set · YEG A203 · binds ASN62, VAL63, ALA64, THR70

Residues it binds most

ALA 4, ASN 4, ASP 4, GLN 4, GLU 4, TYR 4, LEU 2, LYS 2, SER 2, THR 2 (residue and the binding sites it lines).

Found with

  • GNP · Phosphoaminophosphonic acid-guanylate ester
  • CA · Calcium ion
  • MG · Magnesium ion
  • SO4 · Sulfate ion

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