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Ligand · Y9Y

Y9Y · paranitrophenyl-alpha-L-galactopyranoside

Y9Y, paranitrophenyl-alpha-L-galactopyranoside (C12 H15 N O8, 301.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
Y9Y
Formula
C12 H15 N O8
Class
ligand
Structures
2
PDB entries
1

Binding sites

Y9Y in 2 structures; the first of them:

  • 7LNP · Structure of the exo-alpha-L-galactosidase BpGH29 (D264N mutant) from Bacteroides… · Y9Y A602 · binds HIS68, GLU80, TRP81, HIS144, HIS145, HIS189, GLY226, MET227 and 8 more
  • 7LNP · Structure of the exo-alpha-L-galactosidase BPGH29 (D264N mutant) from bacteroides… · Y9Y A602 · binds HIS68, GLU80, TRP81, HIS144, HIS145, HIS189, MET227, TRP262 and 7 more

Residues it binds most

HIS 8, TRP 8, GLU 8, ASN 8, LYS 8, MET 7, ASP 6, GLY 4, TYR 4 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • NA · Sodium ion
  • NI · Nickel (II) ion
  • CL · Chloride ion

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