GL1X · GenesisL1 explorer

Ligand · XKP

XKP · (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate

XKP, (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate (C23 H46 N O8 P, 495.6 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with…

Component
XKP
Formula
C23 H46 N O8 P
Class
ligand
Structures
4
PDB entries
3

Binding sites

XKP in 4 structures; the first of them:

  • 7L2U · cryo-EM structure of DkTx-bound minimal TRPV1 in open state · XKP A802 · binds LEU630, TYR631, CYS634, LEU635, PHE638, ALA66, PHE67, LEU664
  • 7XE4 · structure of a membrane-bound glycosyltransferase · XKP F1925 · binds TYR1451, ALA1454, ARG1455, HIS1654, ILE1655, PHE1658, ILE1680, GLN1683 and 6 more
  • 7YUY · Structure of a mutated membrane-bound glycosyltransferase · XKP F1925 · binds TYR1451, ALA1454, ARG1455, HIS1654, PHE1658, ILE1680, GLN1683, ARG1684 and 7 more
  • 7L2U · Cryo-EM structure of dktx-bound minimal TRPV1 in open state · XKP A802 · binds LEU630, TYR631, CYS634, PHE638, ALA66, PHE67

Residues it binds most

LEU 9, PHE 10, TYR 8, ALA 6, CYS 7, GLU 6, ILE 4, ARG 2, HIS 2, GLN 2 (residue and the binding sites it lines).

Found with

  • C14 · Tetradecane
  • D10 · Decane
  • D12 · Dodecane
  • HP6 · Heptane
  • XJ7 · (2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1r,2r,3s,4s,5r, 6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate
  • NA · Sodium ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • DD9 · nonane
  • BGC · beta-D-glucopyranose

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