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Ligand · XH5

XH5 · (5S)-5-methyl-1,3-diazinane-2,4-dione

XH5, (5S)-5-methyl-1,3-diazinane-2,4-dione (C5 H8 N2 O2, 128.1 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
XH5
Formula
C5 H8 N2 O2
Class
ligand
Structures
1
PDB entries
1

Binding sites

XH5 in 1 structure; the first of them:

  • 8F61 · Dihydropyrimidine Dehydrogenase (DPD) C671S Mutant Soaked with Dihydrothymine… · XH5 B1107 · binds ASN609, GLU611, LEU612, ASN668, SER670, ASN736, THR737, GLY764

Residues it binds most

ASN 2, GLU 2, LEU 2, SER 2, THR 2, GLY 1, ILE 1 (residue and the binding sites it lines).

Found with

  • FAD · Flavin-adenine dinucleotide
  • FMN · Flavin mononucleotide
  • FNR · 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydro-2H-benzo[g]pteridin-1-id-10(5H)-yl)-5-O-phosphonato-D-ribitol
  • SF4 · Iron/sulfur cluster
  • TDR · Thymine

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