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Ligand · X6N

X6N · [(2~{R},3~{S},4~{R},5~{S})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate

X6N, [(2~{R},3~{S},4~{R},5~{S})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate (C7 H15 O9 P, 274.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its…

Component
X6N
Formula
C7 H15 O9 P
Class
sugar
Structures
2
PDB entries
2

Binding sites

X6N in 2 structures; the first of them:

  • 8WO1 · Cryo-EM Structure of Human TLR4/MD-2/DLAM5 Complex · X6N C204 · binds SER120, PHE121, LYS122
  • 8WSA · Cryo-EM Structure of Mouse TLR4/MD-2/DLAM5 Complex · X6N C205 · binds GLU122, GLN339

Residues it binds most

SER 3, GLN 2, GLU 2, LYS 2, PHE 2 (residue and the binding sites it lines).

Found with

  • 0IL · (3R)-3-(tetradecanoyloxy)tetradecanoic acid
  • 2IL · (3R)-3-(dodecanoyloxy)tetradecanoic acid
  • A1L01 · (3~{S})-3-decanoyloxytetradecanoic acid
  • GP4 · 2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • BMA · beta-D-mannopyranose

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