Ligand · WBD

WBD · 2,5-dichloro-1H-benzimidazole

WBD, 2,5-dichloro-1H-benzimidazole (C7 H4 Cl2 N2, 187.0 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component: WBD
Formula: C7 H4 Cl2 N2
Class: ligand
Structures: 2
PDB entries: 1

Binding sites

WBD in 2 structures; the first of them:

7KBG · Structure of Human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 20) · WBD C411 · binds PRO340, ASP341, LYS67, TYR68, LEU162, ALA187, PHE188, THR191
7KBG · Structure of human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 20) · WBD C411 · binds PRO340, ASP341, LYS67, TYR68, LEU162, ALA187, PHE188, THR191

Residues it binds most

ALA 2, ASP 2, LEU 2, LYS 2, PHE 2, PRO 2, THR 2, TYR 2 (residue and the binding sites it lines).

Found with

WBA · N-{(1S)-5-[(2-fluoro-6-hydroxybenzene-1-carbonyl) amino]-1-[5-(naphthalen-2-yl)-1H-imidazol-2-yl]pentyl}-1,3-thiazole-5-carboxamide
CA · Calcium ion
ZN · Zinc ion
SO4 · Sulfate ion
DMS · Dimethyl sulfoxide
PEG · Di(hydroxyethyl)ether

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