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Ligand · WBA

WBA · N-{(1S)-5-[(2-fluoro-6-hydroxybenzene-1-carbonyl) amino]-1-[5-(naphthalen-2-yl)-1H-imidazol-2-yl]pentyl}-1,3-thiazole-5-carboxamide

WBA, N-{(1S)-5-[(2-fluoro-6-hydroxybenzene-1-carbonyl) amino]-1-[5-(naphthalen-2-yl)-1H-imidazol-2-yl]pentyl}-1,3-thiazole-5-carboxamide (C29 H26 F N5 O3 S, 543.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
WBA
Formula
C29 H26 F N5 O3 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

WBA in 2 structures; the first of them:

  • 7KBG · Structure of Human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 20) · WBA A411 · binds GLY28, HIS29, PRO30, MET31, GLU99, ASP100, GLY139, LEU140 and 13 more
  • 7KBG · Structure of human HDAC2 in complex with a 2-substituted benzamide inhibitor (compound 20) · WBA A411 · binds GLY28, HIS29, PRO30, MET31, GLU99, ASP100, GLY139, LEU140 and 13 more

Residues it binds most

GLY 6, HIS 6, ASP 6, PHE 6, CYS 6, GLN 6, GLU 6, LEU 6, MET 6, PRO 6 (residue and the binding sites it lines).

Found with

  • WBD · 2,5-dichloro-1H-benzimidazole
  • CA · Calcium ion
  • ZN · Zinc ion
  • SO4 · Sulfate ion
  • DMS · Dimethyl sulfoxide
  • PEG · Di(hydroxyethyl)ether

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