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Ligand · VVO

VVO · oxovanadium(2+)

VVO, oxovanadium(2+) (O V +2, 66.9 g/mol), in the MolNFT structures on GenesisL1: bound in 10 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
VVO
Formula
O V +2
Class
ligand
Structures
10
PDB entries
6

Binding sites

VVO in 10 structures; the first of them:

  • 6ALR · VioC L-arginine hydroxylase bound to the vanadyl ion, L-arginine, and succinate · VVO A403 · binds HIS168, GLU170, HIS316, ARG334, ARG402
  • 6DB2 · X-ray crystal structure of VioC bound to vanadyl ion, L-homoarginine, and succinate · VVO A403 · binds HIS168, GLU170, HIS316, ARG334
  • 6EDH · Taurine:2OG dioxygenase (TauD) bound to the vanadyl ion, taurine, and succinate · VVO A302 · binds ASN95, HIS99, ASP101, HIS255
  • 6VWR · X-ray structure of clavaminate synthase with vanadyl, succinate, and… · VVO A403 · binds SER134, HIS144, GLU146, HIS279, ARG297
  • 6ALR · Vioc L-arginine hydroxylase bound to the vanadyl ion, L-arginine, and succinate · VVO A403 · binds HIS168, GLU170, HIS316, ARG334, ARG402
  • 6DB2 · X-ray crystal structure of vioc bound to vanadyl ion, L-homoarginine, and succinate · VVO A403 · binds HIS168, GLU170, HIS316, ARG334, HRG402
  • 6EDH · TAURINE:2OG dioxygenase (taud) bound to the vanadyl ion, taurine, and succinate · VVO A302 · binds ASN95, HIS99, ASP101, HIS255
  • 6VWR · X-ray structure of clavaminate synthase with vanadyl, succinate, and… · VVO A403 · binds HIS144, GLU146, HIS279, ARG297
  • 6XPA · Scoe with oxovanadium and the caba substrate bound and HIS299 and ARG157 flipped out · VVO A402 · binds HIS132, ASP134, HIS295, ARG310
  • 6ZAK · Room temperature xfel isopenicillin N synthase structure in complex with the FE(IV)=O… · VVO A403 · binds HIS214, ASP216, HIS270

Residues it binds most

HIS 12, ARG 9, ASP 6, GLU 6, ASN 4, HRG 1, SER 1 (residue and the binding sites it lines).

Found with

  • SIN · Succinic acid
  • ACT · Acetate ion
  • PCX · Deoxyguanidinoproclavaminic acid
  • TAU · 2-aminoethanesulfonic acid
  • 1PE · Pentaethylene glycol
  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether
  • PG4 · Tetraethylene glycol
  • ACV · L-D-(A-aminoadipoyl)-L-cysteinyl-D-valine
  • HRG · L-homoarginine
  • CL · Chloride ion
  • SO4 · Sulfate ion

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