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Ligand · HRG

HRG · L-homoarginine

HRG, L-homoarginine (C7 H16 N4 O2, 188.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
HRG
Formula
C7 H16 N4 O2
Class
ligand
Structures
4
PDB entries
4

Binding sites

HRG in 4 structures; the first of them:

  • 5IJR · X-ray structure of neuropilin-1 b1 domain complexed with Arg-1 ligand. · HRG A501 · binds TYR297, TRP301, THR316, ASP320, SER346, GLU348, THR349, TYR353 and 3 more
  • 6DAX · X-ray crystal structure of VioC bound to Fe(II), L-homoarginine, and 2-oxoglutarate · HRG A402 · binds GLN137, LEU156, VAL157, SER158, LEU165, GLY166, TRP167, HIS168 and 7 more
  • 6DB2 · X-ray crystal structure of VioC bound to vanadyl ion, L-homoarginine, and succinate · HRG A402 · binds GLN137, LEU156, VAL157, SER158, LEU165, GLY166, TRP167, HIS168 and 7 more
  • 7Y5F · Crystal structure of CmnC in complex with L-homoarginine · HRG A402 · binds GLN117, LEU136, VAL137, SER138, LEU145, GLY146, TRP147, HIS148 and 8 more

Residues it binds most

ASP 5, SER 5, LEU 4, GLU 5, GLY 5, TRP 5, ARG 4, GLN 4, HIS 4, PHE 4 (residue and the binding sites it lines).

Found with

  • AKG · 2-oxoglutaric acid
  • VVO · oxovanadium(2+)
  • FE · Fe (III) ion
  • FE2 · Fe (II) ion
  • DMS · Dimethyl sulfoxide
  • EDO · 1,2-ethanediol
  • SIN · Succinic acid
  • TLA · L(+)-tartaric acid

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