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Ligand · VDV

VDV · alpha-D-allofuranose

VDV, alpha-D-allofuranose (C6 H12 O6, 180.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
VDV
Formula
C6 H12 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

VDV in 2 structures; the first of them:

  • 6X7T · Allose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain · VDV A208 · binds ASP110, ASP111, ASN128, GLN129, SER130, GLN156, GLY157, GLY158 and 1 more
  • 6X7T · Allose-bound structure of marinomonas primoryensis PA14 carbohydrate- binding domain · VDV A208 · binds ASP110, ASP111, ASN128, GLN129, SER130, GLN156, GLY157, GLY158 and 1 more

Residues it binds most

ASP 2, GLN 2, GLY 2, ASN 2, SER 2 (residue and the binding sites it lines).

Found with

  • VDS · beta-D-allofuranose
  • CA · Calcium ion

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