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Ligand · VDS

VDS · beta-D-allofuranose

VDS, beta-D-allofuranose (C6 H12 O6, 180.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
VDS
Formula
C6 H12 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

VDS in 2 structures; the first of them:

  • 6X7T · Allose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain · VDS A207 · binds ASP110, ASP111, ASN128, GLN129, SER130, ASP155, GLN156, GLY157 and 2 more
  • 6X7T · Allose-bound structure of marinomonas primoryensis PA14 carbohydrate- binding domain · VDS A207 · binds ASP110, ASP111, ASN128, GLN129, SER130, GLN156, GLY157, GLY158 and 1 more

Residues it binds most

ASP 2, GLN 2, GLY 2, ASN 2, SER 2 (residue and the binding sites it lines).

Found with

  • VDV · alpha-D-allofuranose
  • CA · Calcium ion

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