Ligand · VDO
VDO · [(1R,2R,3S,4S,5S)-2,3,4-trihydroxy-5-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}cyclohexyl]methyl dihydrogen phosphate
VDO, [(1R,2R,3S,4S,5S)-2,3,4-trihydroxy-5-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}cyclohexyl]methyl dihydrogen phosphate (C14 H26 N O11 P, 415.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4…
- Component
- VDO
- Formula
- C14 H26 N O11 P
- Class
- ligand
- Structures
- 4
- PDB entries
- 2
Binding sites
VDO in 4 structures; the first of them:
- 2WTX · Insight into the mechanism of enzymatic glycosyltransfer with retention through the… · VDO A1461 · binds ARG9, ALA20, GLY21, GLY22, LEU23, TYR76, ASN81, TRP85 and 14 more
- 4F97 · Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP and… · VDO A502 · binds TRP105, ASP158, TYR159, GLN160, HIS182, ILE183, PHE215, ARG290 and 7 more
- 2WTX · Insight into the mechanism of enzymatic glycosyltransfer with retention through the… · VDO A1461 · binds ARG9, ALA20, GLY21, GLY22, LEU23, TYR76, ASN81, TRP85 and 14 more
- 4F97 · Crystal structure of vlde, the pseudo-glycosyltransferase, in complex with GDP and… · VDO A502 · binds TRP105, ASP158, TYR159, GLN160, HIS182, ILE183, PHE215, ARG290 and 7 more
Residues it binds most
ARG 12, ASP 12, ASN 12, GLY 12, HIS 12, ILE 12, LEU 12, TYR 12, GLN 12, TRP 12 (residue and the binding sites it lines).
Found with
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.