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Ligand · UQ5

UQ5 · 2,3-dimethoxy-5-methyl-6-(3,11,15,19-tetramethyl-eicosa-2,6,10,14,18-pentaenyl)-[1,4]benzoquinone

UQ5, 2,3-dimethoxy-5-methyl-6-(3,11,15,19-tetramethyl-eicosa-2,6,10,14,18-pentaenyl)-[1,4]benzoquinone (C34 H50 O4, 522.8 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its…

Component
UQ5
Formula
C34 H50 O4
Class
ligand
Structures
4
PDB entries
4

Binding sites

UQ5 in 4 structures; the first of them:

  • 8BEF · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CI membrane core) · UQ5 Y202 · binds ARG612, GLN615, LEU616, ALA627, LEU630, LEU634, VAL244, PRO245 and 10 more
  • 8BEL · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (CIII membrane domain) · UQ5 C403 · binds HIS22, LEU23, TYR26, SER40, GLY43, VAL47, VAL197, SER200 and 4 more
  • 8BQ5 · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation… · UQ5 AC502 · binds HIS22, LEU23, TYR26, THR28, GLY39, SER40, GLY43, LEU46 and 9 more
  • 8BQ6 · Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation… · UQ5 AC502 · binds HIS22, LEU23, TYR26, THR28, GLY39, SER40, GLY43, LEU46 and 9 more

Residues it binds most

LEU 10, VAL 10, PHE 10, HIS 10, ILE 4, SER 6, GLY 9, TYR 9, THR 7, TRP 4 (residue and the binding sites it lines).

Found with

  • FES · Fe2/s2 (inorganic) cluster
  • HEM · Protoporphyrin IX containing Fe
  • UQ7 · Ubiquinone-7
  • UQ9 · Ubiquinone-9
  • FE · Fe (III) ion
  • ZN · Zinc ion
  • 3PH · 1,2-diacyl-glycerol-3-sn-phosphate
  • 8Q1 · S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy) butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate
  • CDL · Cardiolipin
  • COO · Crotonyl coenzyme A
  • FMN · Flavin mononucleotide
  • NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate

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