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Ligand · SSN

SSN · 4-oxobutanoic acid

SSN, 4-oxobutanoic acid (C4 H6 O3, 102.1 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
SSN
Formula
C4 H6 O3
Class
ligand
Structures
8
PDB entries
5

Binding sites

SSN in 8 structures; the first of them:

  • 5LU3 · The Structure of Spirochaeta thermophila CBM64 · SSN A102 · binds TRP31
  • 7ETF · Crystal structure of AbHpaI-Mn-pyruvate-succinic semialdehyde complex, Class II aldolase… · SSN A303 · binds VAL120, GLY121, ALA122, ALA123, LEU124, TRP21, HIS47, ARG72 and 2 more
  • 7ETG · Crystal structure of AbHpaI-Co-pyruvate-succinic semialdehyde complex, Class II aldolase… · SSN A303 · binds VAL120, GLY121, ALA122, ALA123, LEU124, TRP21, ASP44, HIS47 and 3 more
  • 8QMR · Succinic semialdehyde dehydrogenase from E. coli with bound NAD+ and succinic semialdehyde · SSN A502 · binds LYS92, ASN137, PHE138, TRP141, GLN142, ARG145, GLU234, VAL267 and 4 more
  • 8QMT · Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+… · SSN A502 · binds LYS92, ASN137, PHE138, TRP141, GLN142, ARG145, GLU234, VAL267 and 4 more
  • 5LU3 · The structure of spirochaeta thermophila CBM64 · SSN A102 · binds TRP31
  • 7ETF · Crystal structure of abhpai-mn-pyruvate-succinic semialdehyde complex, class II aldolase… · SSN A303 · binds GLY121, ALA122, ALA123, LEU124, ARG72, ALA176
  • 7ETG · Crystal structure of abhpai-co-pyruvate-succinic semialdehyde complex, class II aldolase… · SSN A303 · binds VAL120, GLY121, ALA122, ALA123, LEU124, HIS47, ARG72

Residues it binds most

ALA 20, LEU 12, ARG 20, VAL 19, PHE 8, TRP 16, GLY 12, HIS 11, ASN 8, CYS 8 (residue and the binding sites it lines).

Found with

  • CA · Calcium ion
  • PYR · Pyruvic acid
  • 2NV · 3,6,9,12,15-pentaoxaoctadecan-17-amine
  • NAD · Nicotinamide-adenine-dinucleotide
  • CO · Cobalt (II) ion
  • MN · Manganese (II) ion
  • NI · Nickel (II) ion
  • FMT · Formic acid

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